ICD-O Mapping

Overview

Documentation on the ICD-O mapping project.

Meeting Notes

• 20160617 ICD-O Scope Definition Meeting

Details

Computing Scope

Use the attached transitive_closure.pl script.  The file icdoScope.txt is attached (1558 entries).  A file of those unmapped codes is also attached.

cd Snapshot/Refset/Map
grep 446608001 *Simple* | grep '/' | perl -ne '@_=split/\t/; print if $_[2];' | cut -f 6 | sort -u -o icdo.txt
./transitive_closure.pl ../../Terminology/*_Relationships*txt out.txt
sort -t\ 	 -k 1,1 -o out.txt out.txt
join -j 1 -o 2.2. icdo.txt out.txt > scope.txt
sort -u -o icdoScope.txt scope.txt icdo.txt
/bin/rm f icdo.txt out.txt scope.txt

Production Deployment

1. Load the ICDO-3-1 data
2. Load the prior version ICDO map (as starting point)
3. Create and configure the project (with scope definition based on icdoScope.txt "plus descendants".
   1. Use "REVIEW" workflow
   2. Configure Nicki/Donna as users
   3. Add basic productivity reports.
4. Compute workfow
5. Q: should we create a "published" project to represent last release state?

Publishing ICD-O

TBD

References/Links

• Initial files for ICDO load can be found in https://uat-mapping.ihtsdotools.org/doc/ICDO.zip