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StatusArchived
Version

0.9

Descriptions:

Termdescription typeLanguage/acceptabilityLanguage/acceptabilityCase significance
[course] congenital [morphology] of [body structure] caused by [agent] (disorder)FSNus:Pgb:Pci
[course] Congenital [morphology] of [body structure] caused by [agent]SYNus:Pgb:Pci


Concept model:

Definition status:  


900000000000073002 |Defined|  

Applies to:

<<  276654001 |Congenital malformation (disorder)|


Template Language:

64572001 |Disease (disorder)|  : [[~0..1]]  263502005 |Clinical course (attribute)|  = [[ +id (<  288524001 |Courses (qualifier value)|  ) @course]] , [[~1..1 @rolegroup]]{ [[~1..1]]  116676008 |Associated morphology (attribute)|  = [[+id(<<  49755003 |Morphologically abnormal structure (morphologic abnormality)|  ) @morphology ]], [[~0..1]]  363698007 |Finding site (attribute)|  = [[+id(<  123037004 |Body structure (body structure)|  )]], [[~1..1]]  246454002 |Occurrence (attribute)|  =  255399007 |Congenital (qualifier value)|  , [[~1..1]]  370135005 |Pathological process (attribute)|  = [[ +id ( <<  308490002 |Pathological developmental process (qualifier value)|  ) @proc]], [[~0..1]]  246075003 |Causative agent (attribute)|  = [[ +id (<  410607006 |Organism (organism)|  OR <  105590001 |Substance (substance)|  ) @causative]] }


Link to the misaligned concept report

https://docs.google.com/spreadsheets/d/1XqvkHh3djcIzGvCUOxFGko4rNyqweY-aFlF58DoZGVk/edit#gid=0

Rules for description generation:

  1. Apply General rules for generating descriptions for templates;
  2. Apply Enhancements for the Template Language;

Replaced by:

https://confluence.ihtsdotools.org/x/y5NHAg

6 Comments

  1. The PATHOLOGICAL PROCESS relationship should only be mandatory for subtypes of 276654001 |Congenital malformation (disorder)|, not all the way to the top level of Congenital disease.  For example, Congenital infectious diseases are not due to pathological development processes.

  2. Thanks Jim Case , I changed the domain to restrict to congenital malformation disorders. This would be a sub-template of congenital disorder which only have the occurrence as mandatory. 

  3. Maria Braithwaite ,

    The role group cardinality of 1..1 will cause problems in the misaligned concepts report as many of these concepts have multiple RGs.  Can we see what happens when we change it to 1..*?

  4. 276654001 |Congential malformation| has an Associated morphology = Morphologically abnormal structure, thus

    • it does not satisfy the template (which restricts to descendants of Morphologically abnormal structure)
    • all children MUST have an Associated morphology, but the cardinality is 0..1