Page History

Descriptions:

Concept model:

116680003|Is a (attribute)|

64572001|Disease (disorder)|

263502005 |Clinical course (attribute)|

<<< 288524001 |Courses (qualifier value)|

116676008 | Associated morphology (attribute)|

<< 409774005 |Inflammatory morphology (morphologic abnormality)|

363698007|Finding site (attribute)|

<< 39352004 |Joint structure (body structure)|

246075003|Causative agent (attribute)|

< 105590001 |Substance (substance)|
OR
< 410607006 |Organism (organism)|

246454002 |Occurrence (attribute)|

<<< 282032007 |Periods of life (qualifier value)|

363714003 |Interprets370135005|Pathological process (attribute)|

<<<308489006 363787002 |ObservablePathological entityprocess (observablequalifier entityvalue)|

Definition status:  

900000000000073002|Defined (core metadata concept)|

Applies to

<< 3723001 |Arthritis (disorder)|

Rules for generating descriptions:

Template Language

64572001 |Disease (disorder)| : [[~0..1]] 263502005 |Clinical course (attribute)| = [[ +id (< 288524001 |Courses (qualifier value)| ) @course]] , [[~1..* @rolegroup]]{ [[~1..1]] 116676008 |Associated morphology (attribute)| = [[+id(<< 409774005|Inflammatory morphology (morphologic abnormality)|) @morphology ]], [[~1..1]] 363698007 |Finding site (attribute)| = [[+id(<< 39352004 |Joint structure (body structure)| )]], [[~0..1]] 246454002 |Occurrence (attribute)| = [[ +id(< 282032007 |Periods of life (qualifier value)| ) @occur]], [[~0..1]] 370135005 |Pathological process (attribute)| = [[ +id ( < 308489006 |Pathological process (qualifier value)| ) @proc]], [[~0..1]] 246075003 |Causative agent (attribute)| = [[ +id (< 410607006 |Organism (organism)| OR < 105590001 |Substance (substance)| ) @causative]] }

Link to misalignment reports:

Iterations:

• Original spreadsheet from Peter - https://docs.google.com/spreadsheets/d/1OYK3u4NCS5fDdhR7v5_DfTQm-TRviJdgZ2yE187Fr2U/edit#gid=0 (290 concepts) - before path process was added to template.
• Rerun from Peter - https://docs.google.com/spreadsheets/d/1DwnNPIBLyozrYD7-GxpilKvDI0HTsbta72rrlOs21Cc/edit#gid=0 (157 concepts) - run before or after causative agent was expanded to include organism.
• Rerun from Peter - https://docs.google.com/spreadsheets/d/1Uy7K-PCWWjW_1GGn_OgdoHN1MrOlu89P0_Gu2b69zkk/edit#gid=0 (96 concepts) - run after causative agent was expanded to include orgaism.
• Rerun from Peter - https://docs.google.com/spreadsheets/d/1O7znOrPQygqx53tz-pufp1EwhS5S9nE6g0wz5_AbfDs/edit#gid=0 (96 concepts) in to tasks -working spreadsheet with notes.
• Run from SCA -https://docs.google.com/spreadsheets/d/11NJTLeJPbOpfL2xO8aA1R_vkfXrJi8frICPG36Ed0So/edit- (56 concepts) remaining concepts that do not match template.

Rules for generating descriptions:

1. Apply General rules for generating descriptions for templates
2. Apply Enhancements for the Template Language
3. Replace [morphology] by the word 'infection' if associated morphology is absent; 
4. Replace [morphology] by the word 'infection' if associated morphology is 409774005|Inflammatory morphology (morphologic abnormality)| or 23583003|Inflammation (morphologic abnormality)|. 
5. Remove the semantic tag, e.g. (body structure)
6. Remove 'Structure of' from [body structure] if term starts with 'Structure of'   e.g. 709530002|Structure of phalanx of hand (body structure)|
7. Remove 'structure' from [body structure] if term contains 'structure', e.g. 69536005|Head structure (body structure)|   24097009|Bone structure of hand (body structure)|

JIRA ticket: