E2O 12th meeting 20210602

Daniel Karlsson

Daniel Karlsson James R. Campbell

• Brief review of prioritized Procedures list for scope attached
• Review of results of scripted translation of Evaluation procedures to Observables based on NHS list of most frequently used tests
• OWL file attached, SNOMED OWL needs to be imported
• Script: https://github.com/danka74/snowstorm-client-test/blob/master/gen_owl.ts

Going forward:

• Document script and decisions made
• Panels - identification, naming and implementation
• Totals - identification of corresponding concepts
• What are valuable groupers

Task-force to prepare for business meetings: James R. Campbell Sarah Harry  Penni Hernandez Rob Hausam Daniel Karlsson

2021-05-19:

To add DIRECT SITE or not: 

Agreement that a DIRECT SITE would not be added to the definition unless it is clearly stated in the FSN. Further, INHERES IN would generally take values from the Substance hierarchy.

To model INHERE_IN with substance or specimen:  JCase demurred after substantial discussion and we agreed to use substance...

Being able to use the SNOMED CT hierarchy to organize observables (lab as deployed in Nebraska and the tech preview or "non-lab" as deployed in SNOMED CT Evaluation procedure and Observables hierarchies) for analytics, querying, etc. is the driving use case.  Discussion on structured FSN for transferred procedures did not reach conclusion.

WorkPlan: continue with process evaluation of Serum procedures:

1) detailed review of 800+ concepts in set with removal of Orderables

2) editorial review of template based modelling of set for URU verification

3) Prepare more in-depth analysis for meeting in two weeks. 

2021-06-02:

Issue with primitive or otherwise insufficiently modeled concepts. Suggestion of two streamsof work:

1. A manual stream to manually model concepts from the top X most frequently used list
2. While going through the list, identify patterns where templates can be applied

2021-06-16:

Work of identifying patterns in the most-frequent list. See e2o_v4.owl attached.

• Daniel KarlssonSet up Excel sheet for "orderable" review
• Sarah Harry James R. Campbell review the most-frequent list for orderables
• Daniel Karlssonfind corresponding LOINC tech-preview expressions for most-frequent procedures

Daniel Karlsson