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Welcome and apologies | |
| | Proposal to move from ABNF to ANTLR | Daniel Karlsson | For discussion: Daniel has proposed to change the primary syntax representation for all languages from ABNF to ANTLR. - Auto-translation from ABNF to ANTLR difficult
- ABNF grammar represents the byte representation of UTF-8 / Needs to be updated to include a range of UTF characters (not the byte representation)
- ABNF is a tool-independent language for defining syntaxes / ANTLR is a tool for defining parsers (and dependent on versions)
- Proposal - Continue to use ABNF as the standard, with a hand-crafted ANTLR as the authoratative ANTLR reference implementation
- Alternate representations, e.g. JSON, would be useful (e.g. for templates)
- Actions
- Post authoratative ANTLR syntax used by SNOMED International
- Update ABNF
ABNF needs updating - with additional UTF characters
| Transitivity, Reflexivity &
Role chaining | | Proposed extension to ECL to support transitive relationships and role chaining (to align with new enhanced DL axioms) - Example 1
- Direct relationship
- < 404684003 |Clinical findingBody structure|: << ?? |Associated with774081006 |Proper part of| = << 58800005 |Streptococcus (organism)51185008 |Chest|
- Transitive relationship
- < 404684003 |Clinical findingBody structure|: << ?? |Associated with774081006 |Proper part of|* = << 58800005 |Streptococcus (organism)51185008 |Chest|
- <<(< 404684003 |Clinical findingBody structure|: << ?? |Associated with774081006 |Proper part of| = << 58800005 |Streptococcus (organism)51185008 |Chest|)
- Example 2
- Direct relationship
- < 71388002 ||: 363701004 |Direct substance| = 372687004 |Amoxicillin|
- Role chained relationship (via 738774007 |is modification of|)
- < 71388002 ||: 363701004 |Direct substance|* = 372687004 |Amoxicillin|
- <<(< 71388002 ||: 363701004 |Direct substance| = 372687004 |Amoxicillin|)
What implementation support will be required? Should we provide easy access to those relationships that can be inferred by transitivity and role chains (note: These will be excluded from the inferred relationship file as they are redundant). If so, then what format should be used - for example, a TSV file with the following columns: - sourceId
- destinationId
- typeId
- relationshipGroup
| | END OF MEETING | | Executing maps | | Proposed extension to ECL to support the execution of maps (focusing on the resolution of historical refsets) - The specific use-case here comes initially from Jeremy and relates to being able to work with inactive concepts via the historical association maps. For example, given an ECL expression that identifies a set of concepts 'c' to be used for retrieving patient records, you probably also want to retrieve records for sameAs (c) and replacedWith (c)
- Example:
- (< 72704001 |Fracture| AND ^ 900000000000527005 |SAME AS association reference set|) . 900000000000533001 |Association target component|
| | Template Syntax | Linda Bird | New requirements - 2 slots must have the same value
- 2 slots must have different values
- The value of 1 slot must subsume the value of another
- Default value for slots
| | URI Standard | Linda Bird | - Finalize and publish language and language instance URIs
| Query Language
- Summary from previous meetings
| | Examples: version and language Notes
- Allow nested where, version, language
- Scope of variables is inner query
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| Examples: where Notes - Allow nested variable definitions, but recommend that people don't due to readability
- Scope of variables is the inner query
- No recursion e.g X WHERE X = 1234 MINUS X
- ie can't use a variable in its own definition
- ie X is only known on the left of the corresponding WHERE, and not on the right of the WHERE
| Keywords for Term-based searching: - D.term
- D.term = "*heart*"
- D.term = wild:"*heart*"
- D.term = regex:".*heart.*"
- D.term = match:"hear att"
- D.term = (sv) wild: "*heart*"
- D.languageCode
- D.languageCode = "en"
- D.languageCode = "es"
- D.caseSignificanceId
- D.caseSignificanceId = 900000000000448009 |entire term case insensitive|
- D.caseSignificanceId = 900000000000017005 |entire term case sensitive|
- D.caseSignificanceId = 900000000000020002 |only initial character case insensitive|
- D.caseSignificance
- D.caseSignificance = "insensitive"
- D.caseSignificance = "sensitive"
- D.caseSignificance = "initialCharInsensitive"
- D.typeId
- D.typeId = 900000000000003001 |fully specified name|
- D.typeId = 900000000000013009 |synonym|
- D.typeId = 900000000000550004 |definition|
- D.type
- D.type = "FSN"
- D.type = "fullySpecifiedName"
- D.type = "synonym"
- D.type = "textDefinition"
- D.acceptabilityId
- D.acceptabilityId = 900000000000549004 |acceptable|
- D.acceptabilityId = 900000000000548007 |preferred|
- D.acceptability
- D.acceptability = "acceptable"
- D.acceptability = "preferred"
Additional Syntactic Sugar - FSN
- FSN = "*heart"
- D.term = "*heart", D.type = "FSN"
- D.term = "*heart", D.typeId = 900000000000003001 |fully specified name|
- FSN = "*heart" LANGUAGE X
- D.term = "*heart", D.type = "FSN", D.acceptability = * LANGUAGE X
- D.term = "*heart", D.typeId = 900000000000003001 |fully specified name|, acceptabilityId = * LANGUAGE X
- synonym
- synonym = "*heart"
- D.term = "*heart", D.type = "synonym"
- D.term = "*heart", D.typeId = 900000000000013009 |synonym|
- synonym = "*heart" LANGUAGE X
- D.term = "*heart", D.type = "synonym", D.acceptability = * LANGUAGE X
- D.term = "*heart", D.typeId = 900000000000013009 |synonym|, (D.acceptabilityId = 900000000000549004 |acceptable| OR D.acceptabilityId = 900000000000548007 |preferred|) LANGUAGE X
- synonymOrFSN
- synonymOrFSN = "*heart"
- synonym = "*heart" OR FSN = "*heart"
- D.term = "*heart", (D.type = "synonym" OR D.type = "fullySpecifiedName")
- synonymOrFSN = "*heart" LANGUAGE X
- synonym = "*heart" OR FSN = "*heart" LANGUAGE X
- D.term = "*heart", (D.type = "synonym" OR D.type = "fullySpecifiedName"), D.acceptability = * LANGUAGE X
- textDefinition
- textDefinition = "*heart"
- D.term = "*heart", D.type = "definition"
- D.term = "*heart", D.typeId = 900000000000550004 |definition|
- textDefinition = "*heart" LANGUAGE X
- D.term = "*heart", D.type = "definition", D.acceptability = * LANGUAGE X
- D.term = "*heart", D.typeId = 900000000000550004 |definition|, D.acceptabilityId = * LANGUAGE X
- Unacceptable Terms
- (D.term = "*heart") MINUS (D.term = "*heart", D.acceptability = * LANGUAGE X)
| Language preferences using multiple language reference sets LRSs that use the same Language tend to use 'Addition' - i.e. child LRS only includes additional acceptable terms, but can override the preferred term E.g. Regional LRS that adds local dialect to a National LRS E.g. Specialty-specific LRS E.g. Irish LRS that adds local preferences to the en-GB LRS
LRSs that define a translation to a different language tend to use 'Replacement' - i.e. child LRS replaces set of acceptable and preferred terms for any associated concept
| | Other topics | | | | Confirm next meeting date/time | | The next SLPG meeting will be held in 2 weeks at 20:00 UTC on Wednesday 6th February. |
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