...
Reloading Snomed is typically being done on prod-mapping now before the clone-over, so steps 2-5 should be skipped on alpha iteration.
1.) Take server down. Check RAM allocated to MAVEN_OPTS with export command. Adjust server size and RAM allocated with this command if necessary:
export MAVEN_OPTS="-XX:MaxPermSize=512m -Xmx3000M -Xmx7000M"
2.) cd ~/code/admin/remover
3.) mvn install -PTerminology -Drun.config=/home/ihtsdo/config/config.properties -Dterminology=SNOMEDCT -Dversion=latest
4.) cd ~/code/admin/loader
5.) mvn install -PRF2-snapshot -Drun.config=/home/ihtsdo/config/config.properties -Dterminology=SNOMEDCT -Dinput.dir=/home/ihstdo/data/xSnomedCT_InternationalRF2_ALPHA_20170731T120000Z/Snapshot
6.) DELETE from simple_map_refset_members where refsetId = 446608001;
...
# Keep only morphology codes (with '/')
perl -ne '@_=split/\t/; print if $_[4] eq "446608001"' $file | grep '/' > /tmp/xicdo.txt
mvn install -PSimpleMapRecords -D$rc -Drun.config=/opt/mapping-rest/config.properties -Dinput.file=/tmp/xicdo.txt -Dmember.flag=true -Drecord.flag=false
...
Similar approach to ICD10 but using the "simple" map loader. e.g.
cd ~/codeopt/mapping-admin/remover
mvn install -PMapRecords -Drun.config=/opt/mapping-rest/config.properties -Drefset.id=P446608001
cd ~/codeopt/mapping-admin/loader setgrep file =446608001 /opt/mapping-data/doc/release/SNOMEDCT_to_ICDO_446608001/20200731/der2_sRefset_SimpleMapActiveSnapshot_INT_20200731.txt grep 446608001 $file | perl -pe 's/446608001/P446608001/;' > x.txt mvn install -PSimpleMapRecords -Drun.config=/opt/mapping-rest/config.properties -Dinput.file=x.txt -Dmember.flag=false -Drecord.flag=true >&! mvn.log
...