Introduction

Background

SNOMED CT terminology provides a common language that enables a consistent way of indexing, storing, retrieving, and aggregating clinical data across specialties and sites of care.

SNOMED International maintains the SNOMED CT technical design, the content architecture, the SNOMED CT content (includes the concepts table, the descriptions table, the relationships table, a history table, and ICD mappings), and related technical documentation.

Purpose

This document provides a summarized description of the content changes included in the July 2021 release of SNOMED Clinical Terms^® (SCT) International Release.

It also includes technical notes detailing the known content or technical issues where the root cause is understood, the fix has been discussed and agreed to, but has yet to be implemented.

The SNOMED International Release Notes are available alongside the July 2021 International Edition release.

Scope

This document is written for the purpose described above and is not intended to provide details of the technical specifications for SNOMED CT or encompass every change made during the release.

Audience

The audience includes National Release Centers, WHO-FIC release centers, vendors of electronic health records, terminology developers and managers who wish to have an understanding of changes that have been incorporated into the July 2021 International Edition release.

Content Development Activity

Summary

Continuous quality improvement and enhancement of existing content is an ongoing process undertaken by SNOMED International in preparation for every release. The July 2021 International Release has seen a continuation of the work driven by contributions from: Kaiser Permanente i.e. Convergent Medical Terminology (CMT), Global Medical Device Nomenclature Agency (GMDNA), Orphanet and other domain specific collaborations as well as requests received via the Content Request System (CRS). 

Additionally quality improvement activities are advanced via project driven initiatives summarized below.  Additional work items impacting every release are updates to the SNOMED CT derived maps such as ICD-10 and ICD-O; details are included in these release notes.  

Information about editorial decisions may be found in the SNOMED CT Editorial Guide; mapping guidance for ICD-10 can be found at this link https://confluence.ihtsdotools.org/display/DOCICD10

Info
title NOTICE of significant changes in the July 2021 International Edition release
Following on from the successful technical previews of the impending Concrete Domains changes, released in September 2020 and February 2021 respectively, SNOMED International are now implementing these changes in the July 2021 International Edition Production release.  This contains drug concept strengths and counts expressed as concrete values in a new Relationships file.  Please see the following sections for full details of the content and technical changes: 2.21.3. Concrete Domains and Numeric Representation 3.2.1.3. Concrete Domains launch

Continuous quality improvement and enhancement of existing content is an ongoing process undertaken by SNOMED International in preparation for every release. The July 2021 International Release has seen a continuation of the work driven by contributions from: Kaiser Permanente i.e. Convergent Medical Terminology (CMT), Global Medical Device Nomenclature Agency (GMDNA), Orphanet and other domain specific collaborations as well as requests received via the Content Request System (CRS). 

Additionally quality improvement activities are advanced via project driven initiatives summarized below.  Additional work items impacting every release are updates to the SNOMED CT derived maps such as ICD-10 and ICD-O; details are included in these release notes.  

Information about editorial decisions may be found in the SNOMED CT Editorial Guide; mapping guidance for ICD-10 can be found at this link https://confluence.ihtsdotools.org/display/DOCICD10

New Concepts July 2021 Release
Domain	#New concepts
SNOMED CT Concept (SNOMED RT+CTV3)	4468
Body structure (body structure)	300
Clinical finding (finding)	2027
Event (event)	6
Environment or geographical location (environment / location)	4
Observable entity (observable entity)
New Concepts July 2021 Release
Domain	#New concepts
SNOMED CT Concept (SNOMED RT+CTV3)	4431
Body structure (body structure)	300
Clinical finding (finding)	2025
Event (event)	6
Environment or geographical location (environment / location)	4
Observable entity (observable entity)	377
Organism (organism)	128
Pharmaceutical / biologic product (product)	621644
Physical force (physical force)	0
Physical object (physical object)	317
Procedure (procedure)	301308
Qualifier value (qualifier value)	91
Record artifact (record artifact)	1
Situation with explicit context (situation)	8892
Social context (social concept)|	3
Specimen (specimen)	10
Staging and scales (staging scale)	29
Substance (substance)	103104
SNOMED CT Model Component (metadata)	27

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SCT Statistics July 2021 Release
	#total
Total number of active concepts	350900
Newly inactivated concepts	8021
Newly reactivated concepts	39
Sufficiently defined	121784
Primitive	364159

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350936
Total number of active + inactive components	485977
Concept inactivations	8813

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COVID-COVID-19

Content relating to COVID-19 can be viewed here SNOMED CT COVID-19 Related Content

Any concepts in scope for the SNOMED CT to ICD-10 mapping have been mapped and adhere to the World Health Organization current guidelines.

Body structure 

New body structure concepts: 300

Revision of Anatomy Model for Spine Related Concepts

The term 'spine' or 'vertebral column' in descriptions of disorders or procedures are often used loosely in clinical discourse but in actuality can relate to three different general anatomical concepts and the .

The hierarchy has been reorganized.:

• 421060004 |Structure of vertebral column (body structure) – [synonym, with synonyms: Spinal column, ‘Backbone’Backbone, Spine], which includes the bones of the spine and associated joints and ligaments.
• 289959001 |Musculoskeletal structure of spine (body structure), which includes the vertebral column plus muscles and tendons associated with the spine.
• 1141981001 |Structure of vertebral column region (body structure), which includes the musculoskeletal structure of spine plus spinal canal, meninges, spinal cord, roots and ganglia and immediate soft tissue including adjacent vascular structures where specified.

The use of terms for combined segments of the spine, such as cervicothoracic, thoracolumbar, lumbosacral and sacrococcygeal are ambiguous in that they might relate to a combination of the segments or just the junctional area of the segments. In order to avoid false assumptions, in the anatomy , class the junction of spinal segments have been made explicit by including the word 'junction' in the descriptions which only subsumes. The volume commonly relates to the junction or extent of the junctional zones themselves are not defined consistently in the literature, but most commonly relate to the junction between two segments and one vertebra above and below. In addition, the segmental junctional joints only belong to the superior segment.

Further details can be found here https://confluence.ihtsdotools.org/display/IAP/Review+and+quality+improvement+of+anatomy+relating+to+the+spine (Please note, you may have to register for Confluence user account in order to access this link).

Joint regions 

72 new concepts added for improved coverage of joint regions to support the Quality Initiative project.

Inactivation

Concepts in the 266414008 |Supernumerary tooth (morphologic abnormality) sub-hierarchy have been inactivated (approximately 60 concepts).

Reference set updates

Updated and validated release file for the lateralizable body structure reference set.
Updated and validated release files for the SEP refsets.

Quality Initiative Project

The Quality Initiative (QI) project is the implementation of the Quality Strategy. After a successful pilot project for the July 2018 release the next stage has been implemented for subsequent releases including July 2021. 

Quality improvement tasks were deployed to improve internal structural consistency and ensure compliance with editorial policy related to the stated modeling of content. Additionally, correction or addition of defining relationships was carried out to accurately reflect current clinical knowledge and ensure the semantic reliability of descriptions associated with a concept.

Total count of changes for the QI project for the July 2021 release: 

• Stated: A total of 10759 concepts had changes made to the Stated relationships.
• Inferred: A total of 18818 concepts affected by Inferred changes.

These figures reflect changes made in both the clinical finding and procedure hierarchies.

Clinical Finding

New concepts added for clinical finding hierarchy: 2025

Remodel 367534004 Supernumerary tooth (disorder) and Descendants

Approximately 69 disorder concepts that are descendants of 367534004 Supernumerary tooth (disorder) have been remodeled to subsume under 371136004 Disorder of tooth development (disorder) and have had the value of their 116676008 |Associated morphology (attribute) relationship changed to 91431006 |Supernumerary structure (morphologic abnormality)|.

Concepts in the 266414008 |Supernumerary tooth (morphologic abnormality) sub-hierarchy have been inactivated (approximately 60 concepts).

Remodel Injury Disorder Concepts

"Injury of X' concepts have been remodeled to reflect their generic nature by assigning the parent of "Traumatic or non-traumatic injury".

Revision 118245000 |Measurement finding (finding) and Descendants

The hierarchy 118245000 |Measurement finding (finding)| is currently undergoing structural updates as part of the Quality Initiative project.

Where appropriate this will include modeling with 363713009 |Has interpretation (attribute)| with above, below, and within reference range attribute values.

These changes will continue to be made over a number of future releases.

Remodel 609406000 |Pseudoallergic reaction (disorder)

609406000 |Pseudoallergic reaction (disorder)| was remodeled and renamed to 609406000 |Non-allergic hypersensitivity reaction (disorder)| (no change in meaning) to reflect current editorial guidelines.

Inactivation of Nutritional Finding/Disorders with Infancy, Childhood and Adolescence in FSN

Inactivation of 8 nutritional finding/disorder concepts with 'infancy childhood and adolescence' in FSN, for example 717930008 |Severe nutritional stunting in infancy childhood and adolescence (disorder)|. 

Inactivation of Subtypes of 267280004 |Venous complication of pregnancy and/or puerperium (disorder)

Classification-derived descendants of 267280004 |Venous complication of pregnancy and/or puerperium (disorder)| have been inactivated.

For example, |Superficial thrombophlebitis in pregnancy and the puerperium - delivered with postnatal complication (disorder)|

Contact dermatitis

Updated the modeling for 40275004 |Contact dermatitis (disorder)| and subtypes to adhere with a newly constructed template.

Hernia of abdominal cavity

The finding site value for hernia disorder concepts (excluding obstructed hernias which are being managed separately) has been reviewed and changes made where required to improve classification results.

Fetal finding

The value for the 363698007 |Finding site| attribute for fetal concepts has been updated to << 123037004 |Body structure| MINUS << 55460000 |Fetal structure| unless the site is a unique body structure present during the fetal period.

The fetal semantics are captured using the 246454002 |Occurrence|=303112003 |Fetal period| relationship. These modeling changes have been applied to the fetal content within the Clinical finding hierarchy. Fetal procedure concepts will be reviewed as part of the Procedure QI work.

Fetal or neonatal effect of maternal medical problem

206002004|Fetal or neonatal effect of maternal medical problem (disorder)| and descendants have been inactivated. Replacement concepts that do not include 'or' in the descriptions have been added as subtypes of 70591005|Fetal disorder (disorder)| and 22925008|Neonatal disorder (disorder)|.

Spina bifida

67531005|Spina bifida (disorder) and subtypes have been remodeled and marked as sufficiently defined where appropriate.

'On Examination' and 'Complaining of' concepts

'On examination' and 'Complaining of' concepts have been inactivated in the International release and moved back to the UK extension.

Disorder X without Disorder Y

The vast majority of existing X without Y concepts originated from ICD-9 with the specific meaning of "X disorder without mention of Y disorder".  As the phraseology indicates a lack of data about disorder Y as opposed to a specific exclusion, this type of concept has not been included in ICD-10, nor proposed for ICD-11, except in the case of "Traumatic brain injury without open intracranial wound".  

Addition of new X without Y concepts may only be made under the following conditions:

1. The request for new content must be accompanied by a rationale as to the difference between "X disorder without Y disorder" and "X disorder."
2. Approval for addition is given by the Head of Terminology.

For the most part, existing X without Y concepts will be inactivated as AMBIGUOUS with a historical MAY BE relationship to "X disorder".  Exceptions to inactivation will be made on a case-by-case basis.

Ventricular outflow tract obstruction

Occurrence 'congenital' has been removed from 253546004|Left ventricular outflow tract obstruction (disorder) and 253530007 |Right ventricular outflow tract obstruction (disorder) with remodel of subtypes.

Human immunodeficiency virus

Human immunodeficiency virus Centers for Disease Control and Prevention and Human immunodeficiency virus World Health Organization class content has been updated to align with the current categories.

Chromosome replaced with ring or dicentric

268294001 |Chromosome replaced with ring or dicentric (disorder)| has been inactivated and replaced by 1010276004 |Ring chromosome (disorder). All subtypes have been remodeled and marked sufficiently defined where appropriate. 23345003 |Ring chromosome (morphologic abnormality)| has been remodeled to align with expert input to have monosomy, trisomy and ring chromosome concepts as siblings in the morphology hierarchy.

Review of 419099009 |Dead (finding)| and 397709008 |Patient died (finding)|

397709008 |Patient died (finding)| inactivated as a "Duplicate component" with historical association to 419099009 |Dead (finding)|. All of the subtypes of 397709008 |Patient died (finding)|moved to hierarchy 366044004 |Finding of place of death (finding)| concepts that include 'patient' in FSN inactivated with status outdated and replaced by concept that does not use 'patient' in the descriptions. 304215001 |Patient died during operation (finding)| inactivated and replaced with 876883006 |Died during operation (finding)| subtype of 183676005 |Died in hospital (finding)|. 184297005 |Patient died in hospital (finding)| inactivated as a duplicate of 183676005 |Died in hospital (finding)|

Nutrition finding

Remodeled relationships of descendants of 366358006 |Finding of nutrient intake (finding)| to align with template Nutrition intake findings (Please note, you may have to register for Confluence user account in order to access this link).

Approximately 160 new definitions for nutrition content promoted from the US Extension with the approval of the Nutrition Clinical Reference Group.

Social Determinants of Health (SDoH) - Clinical Finding

In line with SNOMED CT priorities, and working with the US Extension of SNOMED CT to make Social Determinants of Health (SDoH) content available for international usage on the subject matter of food insecurity. This work was based on submissions from the US CRS for content for SDoH originating from the consensus-driven standards being developed by the Gravity project: https://confluence.hl7.org/display/GRAV/The+Gravity+Project

A new concept was added with a definition: 1078229009 |Food security (finding)|
New definition for 733423003 |Food insecurity (finding)|

Also supporting SDoH work:
1010682008 |Not entitled to social services assistance due to income above limit (finding)|

Content Tracker Project Updates

Work completed for the following Content Project: 

• IHTSDO-668 Congenital absence vs. congenital partial absence.

of 303295006 |Choroidal and/or retinal structures (body structure)

• 303295006 |Choroidal and/or retinal structures (body structure)|
• 721949003 |Structure of choroid and/or retina of left eye (body structure)|
• 721948006 |Structure of choroid and/or retina of right eye (body structure)| 

The above three concepts have been inactivated. Concepts with relationships to these anatomic structures were remodeled with 2 role groups, one representing the finding site of 68703001 |Choroidal structure (body structure)| and the other for the finding site of 5665001 |Retinal structure (body structure)|.

The majority of the modeling changes were for ‘chorioretinal’ disorder concepts and findings and 3 procedures were also remodeled (plus one inactivation of 75278007 |Destruction of chorioretinopathy (procedure)|).
Approximately 54 disorder concepts were remodeled with 2 role groups, including 53854005 |Chorioretinal scar (disorder)| and its 18 subtypes, plus two concept inactivations of 69811008 |Peripheral disseminated choroiditis AND chorioretinitis (disorder)| and 56787009 |Peripheral focal choroiditis AND chorioretinitis (disorder)|. Approximately 30 clinical finding concepts were remodeled including 9 subretinal findings and 7 subretinal disorders all remodeled with a finding site of 41275009|Structure of retinal pigment epithelium (body structure)|.

Inactivation of 266414008 |Supernumerary tooth (morphologic abnormality) and Descendants

Concepts in the 266414008 |Supernumerary tooth (morphologic abnormality) sub-hierarchy have been inactivated (approximately 60 concepts).

Update Spelling for Anulus Fibrosus

The spelling for concepts which include 'anulus' in the FSN have been updated to 'annulus'. A synonym with the spelling 'anulus' has been retained for this set of concepts.
For example:

• 24678008|Structure of anulus fibrosus of intervertebral disc of fifth thoracic vertebra (body structure)| has had FSN change to:
• 24678008|Structure of annulus fibrosus of intervertebral disc of fifth thoracic vertebra (body structure)

Reference set updates

Updated and validated release file for the lateralizable body structure reference set.
Updated and validated release files for the SEP refsets.

Quality Initiative Project

The Quality Initiative (QI) project is the implementation of the Quality Strategy. After a successful pilot project for the July 2018 release the next stage has been implemented for subsequent releases including July 2021. 

Quality improvement tasks were deployed to improve internal structural consistency and ensure compliance with editorial policy related to the stated modeling of content. Additionally, correction or addition of defining relationships was carried out to accurately reflect current clinical knowledge and ensure the semantic reliability of descriptions associated with a concept.

Total count of changes for the QI project for the July 2021 release: 

• Stated: A total of 10759 concepts had changes made to the Stated relationships.
• Inferred: A total of 18818 concepts affected by Inferred changes.

These figures reflect changes made in both the clinical finding and procedure hierarchies.

Information about the project can be found here Quality Initiative - Progress (Please note, you may have to register for Confluence user account in order to access this link).

Clinical Finding

New concepts added for clinical finding hierarchy: 2027

Poisoning Disorders

The modeling for approximately 3000 descendants of 441952005 |Poisoning caused by chemical substance (disorder)|, 7895008 |Poisoning caused by drug AND/OR medicinal substance (disorder)|, and 1149322001 |Intoxication (disorder)| sub-hierarchies have been updated for compliance with the newly constructed templates (based on feedback and recommendation from the Editorial Advisory Group):

• Poisoning caused by substance/product
• Intoxication caused by substance/product

More than 500 concepts of the type “ X poisoning of undetermined intent” were inactivated based on the Editorial Advisory Group recommendation.

The concepts in the clinical finding/disorder hierarchy that are defined by "Due to = << 418019003 |Accidental event (event)|" have an inferred parent of "417746004 |Traumatic injury (disorder)|". While this inference is correct for some concepts, it is not accurate for others e.g. Accidental poisoning subtypes. This is a known issue and a content tracker has been created to resolve the issue in a future release.

Overdose Disorders

The modeling for approximately 2200 descendants of 1149222004 |Overdose (disorder)| were updated for compliance with the newly constructed templates.

More than 400 concepts of type “ X overdose of undetermined intent” were inactivated based on the Editorial Advisory Group recommendation.

Remodel Rheumatoid Arthritis Diseases, Acute Rheumatic Fever, Rheumatic Heart Disease and Subtypes

Model development and remodeling for Acute rheumatic fever, Rheumatic heart disease and Rheumatoid arthritis including a separate model for the extraarticular manifestations of rheumatoid arthritis and inactivation of 34248003 |Rheumatic inflammation (morphologic abnormality) and 103628006 |Chronic rheumatic inflammation (morphologic abnormality) which have been replaced in defining relationships by 409774005 |Inflammatory morphology (morphologic abnormality)| and 409777003 |Chronic inflammatory morphology (morphologic abnormality)| respectively.

34248003 |Rheumatic inflammation (morphologic abnormality)| and 103628006 |Chronic rheumatic inflammation (morphologic abnormality)| had been used inconsistently for some rheumatic fever and rheumatic heart disease concepts, and a number of concepts for both rheumatic arthritis and rheumatoid arthritis. In total 82 concepts previously used 34248003 |Rheumatic inflammation (morphologic abnormality)| and 7 concepts previously used 103628006 |Chronic rheumatic inflammation (morphologic abnormality)|.

A new model was developed sufficiently defining 23685000 |Rheumatic heart disease (disorder)| and 48 subtypes, and a new model developed for sufficiently defining 195528001 |Acute rheumatic fever (disorder)| and 10 subtypes and both sub-hierarchies were fully remodeled for the July 2021 release.

A new model was developed for the extra-articular manifestations of rheumatoid arthritis, and 32 relevant concepts fully remodeled and aligned under parent concept 52661003 |Extra-articular rheumatoid process (disorder)|.

Remodel 367534004 Supernumerary tooth (disorder) and Descendants

Approximately 69 disorder concepts that are descendants of 367534004 Supernumerary tooth (disorder) have been remodeled to subsume under 371136004 Disorder of tooth development (disorder) and have had the value of their 116676008 |Associated morphology (attribute) relationship changed to 91431006 |Supernumerary structure (morphologic abnormality)|.

Concepts in the 266414008 |Supernumerary tooth (morphologic abnormality) sub-hierarchy have been inactivated (approximately 60 concepts).

Remodel Injury Disorder Concepts

"Injury of X' concepts have been remodeled to reflect their generic nature by assigning the parent of "Traumatic or non-traumatic injury".

Inactivation of 'Acute Cerebrovascular Accident' Concepts

Concepts with an FSN that includes the term 'acute cerebrovascular accident' have been reviewed and inactivated because cerebrovascular accident is by its nature an acute disorder. Replacement concepts have been created without inclusion of the word 'acute' where required.

Revision 118245000 |Measurement finding (finding) and Descendants

The hierarchy 118245000 |Measurement finding (finding)| is currently undergoing structural updates as part of the Quality Initiative project.

Where appropriate this will include modeling with 363713009 |Has interpretation (attribute)| with above, below, and within reference range attribute values.

These changes will continue to be made over a number of future releases.

Remodel 609406000 |Pseudoallergic reaction (disorder)

609406000 |Pseudoallergic reaction (disorder)| was remodeled and renamed to 609406000 |Non-allergic hypersensitivity reaction (disorder)| (no change in meaning) to reflect current editorial guidelines.

Inactivation of 250171008|Clinical history and observation findings (finding)

The primitive concept 250171008 |Clinical history and observation findings (finding)| has been inactivated.

Inactivation of Nutritional Finding/Disorders with 'Infancy, Childhood and Adolescence' in FSN

8 nutritional finding/disorder concepts with 'infancy childhood and adolescence' in FSN have been inactivated.

For example 717930008 |Severe nutritional stunting in infancy childhood and adolescence (disorder)|. 

Inactivation of Subtypes of 267280004 |Venous complication of pregnancy and/or puerperium (disorder)

Classification-derived descendants of 267280004 |Venous complication of pregnancy and/or puerperium (disorder)| have been inactivated.

For example, |Superficial thrombophlebitis in pregnancy and the puerperium - delivered with postnatal complication (disorder)|

Revision 41969006 |Idiopathic disease (disorder)

Remodeling of concepts specified as idiopathic, etiology unknown, cryptogenic, to be subtypes of 41969006 |Idiopathic disease (disorder)| when appropriate.

Revision 43064006|Hydronephrosis (disorder) 

The modeling of 43064006|Hydronephrosis (disorder)| and descendants has been reviewed and improved where indicated. 

Revision 109675004|Oroantral fistula (disorder)

Content in the area of Oroantral communication and fistula has been reviewed and revised in both the disorder and procedure hierarchies.  

Inactivation of 402625004 |Developmental and/or congenital abnormality of nail (disorder)

402625004 |Developmental and/or congenital abnormality of nail (disorder)| was inactivated and its subtypes assigned with more appropriate supertypes and defined where possible.

Remodel 399992009 |Erythroderma (disorder)

After review, 399992009 |Erythroderma (disorder)| was marked as primitive and its inferred subtypes reclassified as appropriate.

Revise Descriptions for Pacemaker Finding/Disorder

Concepts which refer to a cardiac pacemaker but do not include "cardiac" in the FSN have been updated to include "cardiac pacemaker."

Where the content was ambiguous as to the location of the pacemaker, it was inactivated and replaced. Work on this area of content continues.

Revision 302227002 |Ecchymosis (finding)

302227002 |Ecchymosis (finding)| and descendants have been remodeled and defined where appropriate.

Revision 200983001 |Pityriasis lichenoides (disorder)

200983001 |Pityriasis lichenoides (disorder)| and descendants have been remodeled with a change to finding site.

Inactivation of 19410003 |Macrocephaly (disorder) and 1829003|Microcephalus (disorder)

19410003 |Macrocephaly (disorder)| has been inactivated and replaced by two concepts:

• 1145403003 |Macrocephaly (finding)|
• 1145402008 |Congenital macrocephaly (disorder)|

1829003|Microcephalus (disorder)| has been inactivated and replaced by two new concepts:

• 1148757008 |Microcephaly (finding)|
• 1148758003 |Congenital microcephaly (disorder)|

Subtype concepts have been added as appropriate to these new concepts.

Update FSN that use Non Permissible Characters 

FSN has been updated for 185 concepts (across hierarchies) to align with this rule "An active FSN should not contain the special characters &, %, $, @ or #.", and also with the editorial guidance for special characters.

SDoH - Social Determinants of Health Finding

5 new concepts added for housing instability finding.

Nutrition Finding

Added 20 nutrition finding concepts.

Convergent Medical Terminology (CMT)

New CMT concepts: 700

Focus areas include:

• Acquired disorder
• Thrombophlebitis
• Amputation stump finding/disorder
• Injury
• Seropositive rheumatoid arthritis
• Cerebrovascular accident
• Neoplasm

Procedure

New concepts for procedure hierarchy: 308

Revise Descriptions for Pacemaker Procedures

Concepts which refer to a cardiac pacemaker but do not include "cardiac" in the FSN have been updated to include "cardiac pacemaker."

Where the content was ambiguous as to the location of the pacemaker, it was inactivated and replaced. Work on this area of content continues.

Update Descriptions for Subtypes of 418272005|Computed tomography angiography with contrast (procedure)

Update to the descriptions for CT arteriography and CT venography concepts in the procedure hierarchy to align with the editorial guide for Computed Tomography - CT.

Inactivation of Subtypes of 77477000 |Computed tomography (procedure)

• 303678006 |Computed tomography of regions (procedure)|
• 303679003 |Computed tomography of systems (procedure)|

Both of the above concepts have been inactivated with reason 'ambiguous' and 'Possibly equivalent to' 77477000 |Computed tomography (procedure)|.

SDoH - Social Determinants of Health Procedure

One new concept added for education procedure.

Nutrition

Added 24 diet regime/therapy concepts.

Remodeled 120 diet regime/therapy concepts.

Revision of Teletherapy and Teleradiotherapy Procedures

60 concepts which included "teletherapy" or "teleradiotherapy" in the FSN were updated to include "external beam radiation therapy."

7 concepts which included "external beam" in the FSN were updated to include "external beam radiation therapy" in the FSN.

49569001 |Consultation in teletherapy (procedure)| was inactivated and replaced with a new concept: 1144767008 |Consultation in external beam radiation therapy (procedure)|.

Update to 271422003 |Fit denture (procedure)| Subhierarchy

Concepts in the 271422003 |Fit denture (procedure)| subhierarchy have been remodeled with the finding site of 28035005 |Tooth, gum, and/or supporting structure (body structure)| or subtype.

Ambiguous concepts have been inactivated and replaced. For example 6502003 |Complete lower denture (procedure)| has been replaced by 1144276002 |Fitting of complete lower denture (procedure)|.

Changes have been made to approximately 25 concepts, including approximately 15 inactivations.

Inactivation of 68972003 |Insertion of therapeutic device (procedure)

Therapeutic role is out of scope for devices so this and related content has been inactivated.

• 45290003 |Closed insertion of therapeutic device (procedure)|
• 20554002 |Open insertion of therapeutic device (procedure)|
• 25101005 |Removal of therapeutic device (procedure)|
• 19798005 |Removal of therapeutic device from neck (procedure)|
• 22852002 |Therapeutic implant, device (physical object)|

Collaboration/Harmonization Agreements

Orphanet

Working in collaboration with Orphanet (http://www.orpha.net/consor/cgi-bin/index.php), creation of new concepts for the original set of prioritized rare diseases has been completed. All of the concepts added for the Orphanet project have been mapped to ICD-10. 

The alpha release was published on schedule please see April 2020 SNOMED CT Orphanet Simple Map package ALPHA release available (Please note, you may have to register for Confluence user account in order to access this link).

The Production release of the SNOMED CT to Orphanet Simple Map will be published in October 2021 and will be based on the July 2021 International release of SNOMED CT. 

ICD-11 Update

A total of 433 new concepts were added for the July 2021 release.

Global Medical Device Nomenclature Agency (GMDNA)

57 new physical object device concepts were added for the SNOMED CT - GMDN map for the July 2021 release.

245 concepts have been removed from the scope of the map due to modifications to descriptions or obsolete GMDN codes.

Inactivation and Replacement of Neoplastic Morphology Concepts Containing ICD-O-3 Classification Terming

The WHO ICD-O version 3 morphology code listing is used for recording the histological cell type and behavior of neoplasms (mainly by cancer registries). ICD-O-3 classification terming of 'NOS' (not otherwise specified) has been historically included in SNOMED CT neoplastic morphologic abnormalities, but this wording is no longer acceptable in SNOMED CT as per Editorial Guidance, and is not meaningful outside of the 'closed' ICD-O-3 classification context.

In the current 400177003 |Neoplasm and/or hamartoma (morphologic abnormality)| sub-hierarchy there are approximately 75 neoplastic morphology concepts containing the terming "no International Classification of Diseases for Oncology subtype (morphologic abnormality)" and/or the description terming "no ICD-O subtype" and they are utilized in the modeling of about 460 disorders in the 55342001 |Neoplastic disease (disorder)| hierarchy.

An ongoing project will inactivate concepts and descriptions termed "no International Classification of Diseases for Oncology subtype (morphologic abnormality)" and "no ICD-O subtype" with reason Outdated (pending the development of a specific inactivation reason for classification schema entities) and they will be replaced with either a new neoplasm morphology concept or pointed to an existing replacement morphology concept and at the same time their related disorders are being remodeled. This work is being carried out with expert input when required from the pathologists in the Cancer Synoptic Reporting Clinical Project Group. For example: 79074005 |Odontoma, no International Classification of Diseases for Oncology subtype (morphologic abnormality)| has been inactivated and replaced with new concept 1156647001 |Benign odontoma (morphologic abnormality)|. The project also involves identifying non-synonymous descriptions on these morphology concepts originating from ICD-O-3 and also similar synonyms on some disorders, and inactivating these synonyms and recreating as new concepts where appropriate.

For the July 2021 release approximately half of these concepts have been inactivated, comprising 38 morphological abnormality concepts termed "no International Classification of Diseases for Oncology subtype."

In some cases the work has overlapped with the next planned larger phase of the project which will be addressing those groupers containing the word "- category" and 6 of these groupers have been inactivated e.g. 409703003 |Adrenal cortical adenoma - category (morphologic abnormality)|.

ICNP - International Classification for Nursing Practice

Approximately 250 new concepts have been added to support the SNOMED CT to International Classification for Nursing Practice equivalence product.

Cancer Synoptic Reporting

Over 300 concepts representing cancer synoptic reporting content were added or updated in the areas of histologic type, histologic grade, invasion and lymph nodes. This content primarily encompasses observable entity concepts and also includes supporting concepts from other hierarchies, including properties, techniques, staging scales and body structures.

Cancer synoptic reports are used by many member countries to record pathology examination of cancer specimens including the College of American Pathologists (US and Canada), Royal College of Pathology (UK), Royal College of Pathology Australasia (Australia, New Zealand), PALGA (The Netherlands), Swedish Society of Pathology, and others.

For more information about this project, please see Cancer Synoptic Reporting Clinical Project Group (Please note, you may have to register for Confluence user account in order to access this link).

Event

New concepts added: 6

Qualifier Value

New concepts added: 91

Technique

2 new technique concepts were added to the Qualifier value hierarchy with a use case of defining COVID-19 tests.

Social context

New concepts added: 3

Situation with explicit context 

New concepts added: 92

Physical object

New concepts added: 317

Physical Object Concept Inactivations

Physical object concepts that are described as a kit or set have been inactivated with reason 'nonconformance to editorial policy' without a replacement concept. Exceptions are noted in the editorial guidelines for the Physical object hierarchy.

• Inactivation of approximately 600 physical object concepts that refer to a kit or set.
• Inactivation of approximately 1200 physical object concepts that include use frequency (e.g., "single use catheter").
• Inactivation of approximately 600 physical object concepts that include a size or dimension (e.g., "30 cm catheter").

New Physical Object Attributes

New attribute types added for:

• Has absorbability
• Has surface texture
• Is sterile
• Has coating material

Existing attribute types for 'Has surface characteristic' and 'Has device characteristic' have been inactivated.

Further details are available in the briefing note posted here Devices Project (Please note, you may have to register for Confluence user account in order to access this link).

Specimen

New concepts added: 10

Observable Entity 

New concepts added: 377

Revision of Height Observables

The body height concepts in the observable entity hierarchy have been remodeled:

• Added a new concept 1153637007 |Body height (observable entity)| which is the supertype for all the body height concepts (1149101003 |Recumbent body height (observable entity)|, 248333004 |Standing height (observable entity)|, and 276353004 |Crown heel length (observable entity)|). This new concept includes a text definition for clarity.
• Added a new concept 1149101003 |Recumbent body height (observable entity)| which includes descriptions of "Crown heel length" and "Supine length."
• Inactivated the following concepts: 248334005 |Length of body (observable entity)|, 276351002 |Infant length (observable entity)|, 276353004 |Crown heel length (observable entity)|, 422769007 |Method for measuring height (observable entity)|.

New Content for Parameter Observables

New content additions to represent parameter observables:

• 1156597009 |Parameter (observable entity)| with text definition "A parameter is an entity whose value is determined by decision of an agent as opposed being observed in reality. Examples of parameters are goals or targets, equipment settings, and treatment parameters."
• This is the supertype of 1055210001 |Target parameter (observable entity)| as well as new concepts 1156601009 |Treatment parameter (observable entity)| and 1156600005 |Device setting parameter (observable entity)|.

Work in this area is ongoing and additional changes will be made.

Nutrition Observables

Added 115 new nutrition observable entity concepts.

Review and Update of Mental Health Function and State Observables

A review and update of mental health function and state observables has been undertaken by the Mental and Behavioral Health Clinical Reference Group in preparation for work to define mental health clinical findings and disorders. The resulting improvement in clinical findings will be the correct subsumption of concepts enabling improved searching/selection of content and analysis of patient groups.

For example: 413384008 |Ability to perform cognitive activity (observable entity)| assigned the additional parent of 311465003 |Cognitive functions (observable entity)| so clinical finding concepts using this attribute value in modeling would usefully and correctly classify as subtypes of 373930000 |Cognitive function finding (finding)| or one of its subtypes.

Organism

New concepts added: 128

Inactivation of Breed Content

More than 3000 concepts in the organism hierarchy related to various breeds and were inactivated from the International release and moved to the veterinary extension.

Based on the editorial guidelines, breeds are restricted to the veterinary domain.

Pharmaceutical/Biological Product

New concepts added: 644

Precise Active Ingredient/Basis of Strength Substance Reconciliation of Clinical Drugs

A review has been initiated of instances where the Basis of strength substance (BoSS) and Precise active ingredient (PAI) combination differs for the same dose form (e.g. for a conventional release oral tablet, we would expect the BoSS + PAI combination would be the same for all existing concepts).

As a result, approximately 120 clinical drug concepts have been inactivated and replaced by existing content or new concepts. Note: This review will span multiple releases.

New Vaccine Attributes

The SNOMED CT Editorial Advisory Group (EAG) has recommended replacement of the existing 'Has product characteristic' and 'Has ingredient characteristic' attributes used to model vaccine products in the Medicinal product hierarchy with more explicit attributes. For the July 2021 International edition of SNOMED CT:

• Added new attribute 1149367008 |Has target population (attribute)| and transition existing instances of 860781008 |Has product characteristic (attribute)| to the new attribute.
• Added new attribute 1149366004 |Has ingredient qualitative strength (attribute)| and transition existing instances of 860779006 |Has ingredient characteristic (attribute)| to the new attribute.

The existing attributes 860781008 |Has product characteristic (attribute)| and 860779006 |Has ingredient characteristic (attribute)| will no longer be used for modeling in the International Release. Inactivation of these attributes will be discussed with the EAG. Users and implementers are encouraged not to use these attributes and to request addition of specific attributes to support modeling in national extensions moving forward.

Editorial Guides Available via SNOMED CT Document Library

The following editorial guides are now available: 

• SNOMED CT Editorial Guide - Pharmaceutical Dose Form
• SNOMED CT Editorial Guide - Pharmaceutical and Biologic Product (includes the Medicinal Product hierarchy)

Access via the SNOMED CT Document Library https://confluence.ihtsdotools.org/display/DOCEG

Veterinary Extension

3018 concepts were moved to the Veterinary Extension.

This number includes more than 3000 concepts in the organism hierarchy as noted above in Section 2.16.1.

Metadata concept

New concepts added: 27

Substance

New concepts added: 104

Nutrition Substance

4 new concepts added.

Internal Quality Improvement

Replacement of the Stated Relationship files with the new OWL Axiom refset files

A set of documentation has been developed to support the Logic Profile Enhancements. (Please note, you may have to register for Confluence user account in order to access the links below.)

• • SNOMED DL Profile Enhancements
  • SNOMED CT Logic Profile Specification
  • SNOMED CT OWL Guide (OWL Refsets specification)
  • Snomed OWL Toolkit -https://github.com/IHTSDO/snomed-owl-toolkit
  • Classifying SNOMED CT using the Snomed OWL Toolkit - https://youtu.be/-91egY9mJqA
  • Creating an OWL file containing SNOMED CT - https://youtu.be/sfFbMMioA_4

For any questions, please contact SNOMED International at support@snomed.org with “OWL Axiom refset files implementation question” in the subject line.

Machine Readable Concept Model (MRCM) Changes

The MRCM includes new rows to indicate that the new attribute types are expected to take a concrete domain - specifically numbers - as target values. 

MRCM for new attributes:

• 1003703000 |Process extends to (attribute)|
• 1148965004 |Is sterile (attribute)|
• 1148967007 |Has coating material (attribute)|
• 1148968002 |Has surface texture (attribute)|
• 1148969005 |Has absorbability (attribute)|
• 1149367008 |Has target population (attribute)|
• 1149366004 |Has ingredient qualitative strength (attribute)|

Extend the range of:

• 363713009 |Has interpretation (attribute)|

MRCM remove:

•  840562008 |Has device characteristic (attribute)|
•  246196007 |Has surface characteristic (attribute)|

Further details can be found here MRCM changes in the July 2021 release (Please note, you may have to register for Confluence user account in order to access this project and the relevant links above).

Concrete Domains and Numeric Representation

The July 2021 International Edition is the first release after the transition to Concrete Domains. 

• The RF2 package is impacted as follows:
  • existing drug concept strength and count relationships inactivated +
  • existing strength and count attribute types inactivated, replaced with new ones using the same FSNs.
• Inferred Relationship file changes:
• Stated OWL Axiom file changes:
• existing drug concept axioms updated to use concrete values +
• existing strength and count attribute types inactivated, replaced with new ones using the same FSNs.
• Additional Features in International Release
• new separate concrete value relationship file expresses these same attributes using numeric values
• new attributes used, although they will have the same FSNs as the current attributes
• MRCM includes new rows to indicate that the new attribute types are expected to take a concrete domain - specifically numbers - as target values.

Please contact SNOMED International with questions at support@snomed.org with “Concrete Domains transition question” in the subject line.   

SNOMED CT derived products

ICD-10 map

The SNOMED CT to the International Statistical Classification of Diseases and Related Health Problems, Tenth Revision (© World Health Organization 1994) 2016 Version map (SNOMED CT to ICD-10 Map) is included in the SNOMED CT International release as a Baseline. The SNOMED CT to ICD-10 Map was created to support the epidemiological, statistical and administrative reporting needs of SNOMED International member countries and WHO Collaborating Centers.

The SNOMED CT to ICD-10 Map is released in Release Format 2 (RF2) only. It is located in the file der2_iisssccRefset_ExtendedMapFull_INT_20200731.txt, which is in the Map folder under Refset, in each of the three RF2 Release Type folders. 

The SNOMED CT to ICD-10 Map is released as Refset 447562003 |ICD-10 complex map reference set (foundation metadata concept)|.

Content development activity summary

The map is a directed set of relationships from SNOMED CT source concepts to ICD-10 target classification codes.  The SNOMED CT source domains for the MAP are limited to subtypes of 404684003 |clinical finding|, 272379006 |event| and 243796009 |situation with explicit context|.  The target classification codes are ICD-10 2016 release. 

 Mapped content for July 2021

The map provided for the July 2021 release has been updated, and now represents a complete map from SNOMED CT International release to ICD-10 2016 version.

•  2192 newly authored concepts have been added and mapped (2096 Clinical findings, 90 Situation with explicit context, and 6 Event)
•  3 new codes for special purposes  have been added to the terminology browser in accordance with WHO guidelines:

· U08 Personal history of COVID-19

· U09 Post COVID-19 condition

· U10 Multisystem inflammatory syndrome associated with COVID-19

• The SNOMED to ICD-O (morphology) map has had a  total of 80 concepts added as a result of the ICD-O 3.2 review or added due to CRS requests.

We would welcome feedback on any issues that users of the map may detect when using the map. Issues should be submitted via mapping@snomed.org

Technical Guide Exemplars

The Technical Guide Exemplars document has now been moved from the International Edition release package to a Confluence page.  This page can be found as part of the ICD-10 Mapping Technical Guide (see Appendix B), which is hosted here:  http://snomed.org/icd10map

SNOMED CT to OWL conversion and classification

The repository containing the toolkit enabling simple SNOMED CT to OWL conversion and classification can be found here, including documentation on its use: https://github.com/IHTSDO/snomed-owl-toolkit

Please contact SNOMED International at support@snomed.org if you would like to provide any feedback on ways to extend and improve the new toolkit.

Technical notes

Known Issues

Known Issues are content or technical issues where the root cause is understood, and the resolution has been discussed and agreed but has yet to be implemented.  This can be due to a number of reasons, from lack of capacity within the current editing cycle, to the risk of impact to the stability of SNOMED CT if the fix were to be deployed at that stage in the Product lifecycle.  

For the current SNOMED CT International edition, the following Known Issues were identified, and agreed to be resolved in future editing cycles:

Resolved Issues

Resolved issues are Known Issues which were not fixed as part of the previous release lifecycle, but which have now been resolved in the latest release.  They can also be issues found during the Alpha and Beta testing of the current release, which were resolved before the final deployment of the associated Member release.  Finally they can be issues which were reported or found during the testing phase, but which have been closed without any action taken.  

The Resolved Issues for the current Snomed CT International edition can be found here:

Technical updates

RF2 package format

For future reference, the RF2 package convention dictates that it contains all relevant files, regardless of whether or not there is content to be included in each particular release.  Therefore, the package contains a mixture of files which contain both header rows and content data, and also files that are intentionally left blank (including only a header record).  The reason that these files are not removed from the package is to draw a clear distinction between files that:

• have been deprecated (and therefore removed from the package completely), due to the content no longer being relevant to RF2 in this or future releases, and 
• happen to contain no data in this particular release (and are therefore included in the package but left blank, with only a header record), but are still relevant to RF2, and could therefore potentially contain data in future releases.

This allows users to easily distinguish between files that have purposefully been removed or not, as otherwise if files in option 2 above were left out of the package it could be interpreted as an error, rather than an intentional lack of content in that release.

Configuration file in the RF2 package, containing Release Metadata 

A new file has been included since the July 2020 International Edition, containing metadata about the Release package itself.  This has been created in conjunction with feedback from the community, and as such initially contains the following fields:

• effectiveTime
  
• deltaFromDate
  
• deltaToDate
  
• languageRefset(s)
  
• humanReadableLanguageRefset(s)
  
• licenceStatement
  

The file is in .JSON format, to ensure that it is both machine-readable and human-readable, and is named "release_package_information.json".

The metadata will be extended and refined going forward, in order to ensure that it contains the most useful information possible. If you have any ideas about any other useful information to include, please send them to info@snomed.org, along with a business case explaining how the information would benefit stakeholders.  Please be aware that this use case will then be assessed by SNOMED International, and the new metadata will only be included in the configuration file if the business case is strong enough.  

Concrete Domains launch

Following on from the successful technical preview of the impending Concrete Domains changes, released in February 2021, SNOMED International are now implementing the changes in the July 2021 International Edition Production release.  This contains drug concept strengths and counts expressed as concrete values in a new Relationships file.  The RF2 Release package for July 2021 therefore incorporates the following changes:

• Inferred Relationship file changes:
  
  • All relationships for values of strength and count for medical products inactivated

  • All relationships for attributes of strength and count for medicinal products inactivated

  • New relationships for new concept model data attributes of strength, count, product name, and supplier for medicinal products will be added 

• Stated OWL Axiom file changes:

• Existing drug concept axioms updated to use concrete values
• Existing strength and count attribute types will be inactivated, replaced with new ones using the same FSNs.
• New Inferred "Relationship Concrete Values" files:
  • New concrete values relationship files added to the RF2 package structure, containing all new relationships for values of strength and count for medical products:
    • sct2_RelationshipConcreteValues_Delta_INT_20210731.txt
    • sct2_RelationshipConcreteValues_Full_INT_20210731.txt
    • sct2_RelationshipConcreteValues_Snapshot_INT_20210731.txt
• MRCM file changes:
• MRCM includes new rows to indicate that the new attribute types are expected to take a concrete domain - specifically numbers - as target values.

Advanced Notice of upcoming changes to the International Edition Release Schedule

Early visibility of impending change in the January 2022

Notice: Inactivation reason of LIMITED/WAS_A is not allowed for any new content inactivations after the July 2018 release. The WAS_A association refset has not been updated thereafter.

At the Editorial Advisory Group meeting in April 2019, agreement was reached to discontinue the maintenance of WAS_A relationships when inactivating concepts that have a historical association to an inactive concept. When changes are made to a historical relationship for a concept that was previously inactivated using WAS_A, effort will be made to assign a new historical relationship that facilitates traceability of the concept (e.g. DUPLICATE or AMBIGUOUS) as opposed to NON-CONFORMANCE TO EDITORIAL POLICY.

Existing WAS_A relationships will be inactivated in a future release once a plan for batch reassignment of historical relationships has been developed. Until then, SNOMED International will not continue to use or maintain WAS_A relationships.

Notice: 'Co-occurrent and due to' pattern:

During the implementation of the new Description Logic features, a conflict was uncovered between the modeling of 'Co-occurrent and due to' and General Concept Inclusions (GCIs). This has resulted in the need to reconsider the modeling of "Co-occurrent and due to' and update the Editorial Guide for this area.

The Editorial Guide and all concepts that are currently modeled as 'Co-occurrent and due to' will be updated over future release cycles.

Convergent Medical Terminology (CMT)

New CMT concepts: 621

Procedure

New concepts for procedure hierarchy: 237

Computed tomography angiography

After consultation with clinical stakeholders and the Editorial Advisory Group, the following changes have been implemented:

• 418272005|Computed tomography angiography (procedure)| and all subtypes have been remodeled to include attribute 424361007 |Using substance (attribute)| and value 385420005 |Contrast media (substance)| in the role group.
• The descriptions for 418272005|Computed tomography angiography (procedure) and subtypes have been updated to explicitly state ‘with contrast.’
• Where logical equivalence has been identified once the above changes have been implemented one of the concepts has been inactivated, in these cases the existing concept that stipulates 'with contrast' in the FSN has been retained.

Fluoroscopic angiography

After consultation with clinical stakeholders and the Editorial Advisory Group, the following changes have been implemented:

• Remodeling of 420040002|Fluoroscopic angiography (procedure)| and all subtypes to include attribute 424361007 |Using substance (attribute)| and value 385420005 |Contrast media (substance)| in the role group.
• The descriptions for 420040002|Fluoroscopic angiography (procedure)| and subtypes have been updated to explicitly state ‘with contrast.'
• Remodeling as described above for 743 concepts.
• New descriptions were added to 640 concepts, including Fully Specified Name, Preferred Term and all synonyms.
• 2 new concepts were added.
• 117 Primitive concepts were made Sufficiently Defined - Note where logical equivalence was identified once the above changes were implemented this resulted in 11 concepts being inactivated, in these cases the existing concept that stipulated contrast in the FSN was retained.

Administration of vaccine

Updated inactivation reason to Outdated for "administration of vaccine products" that refer to "double" or "triple" but not for those that also refer to additional vaccines.

Social Determinants of Health (SDoH) Procedure

New evaluation procedure concepts:
1004109000 |Assessment of goals to achieve food security (procedure)|
1002223009 |Assessment of progress toward goals to achieve food security (procedure)|
1002224003 |Assessment for food insecurity (procedure)|
1002225002 |Assessment of barriers in food insecurity care plan (procedure)|
Also
1004110005 |Coordination of resources to address food insecurity (procedure)|

Laboratory procedure

Inactivation of 3 misplaced laboratory procedure concepts:

167350008 |Urine microscopy: no cells (procedure)|

167351007 |Urine microscopy: no epithelial cells (procedure)|

167352000 |Urine microscopy: no white cells (procedure)|

All referred to new findings concepts.

Nutrition procedure

Added one procedure concept for Nutrition: Administration of parenteral nutrition (procedure)|.

Remodeled relationships of many descendants of 182922004 |Dietary regime (regime/therapy)| to align with template.

Content Tracker Project Updates

Work continues on content tracker IHTSDO-175.

There are ongoing structural changes for the Procedure concepts related to the content tracker. Work on this project will continue for future releases after July 2021.

Collaboration/Harmonization Agreements

Orphanet

Working in collaboration with Orphanet (http://www.orpha.net/consor/cgi-bin/index.php), creation of new concepts for the original set of prioritized rare diseases has been completed.

The alpha release is now available for feedback, for more information please see April 2020 SNOMED CT Orphanet Simple Map package ALPHA release available

All of the concepts added for the Orphanet project have been mapped to ICD-10. 

ICD-11 Update

A total of 500 new concepts were added for the January 2021 release.

Global Medical Device Nomenclature Agency (GMDNA)

33 new device concepts were added to the physical object hierarchy for GMDN for the January 2021 release.

 For the GMDN mapping equivalence tables: 

• 33 new concepts have been added to in scope and mapped.
• 199 concepts have been modified and removed from the mapping tool as out of scope.
• 84  concepts have been deemed obsolete and removed from the mapping tool and flagged as out of scope.
• 16 concepts have been flagged as out of scope for SNOMED CT and removed from this map.

ICD-O-3.2 Update

6 new morphologies have been added to the 108369006 |Neoplasm (morphologic abnormality)| sub-hierarchy and mapped to ICD-O-3.1, or researched and mapped to 'no target' as a suitable morphology code is not available in ICD-O-3.1:

• 1078227006 |High-grade non-invasive papillary urothelial carcinoma (morphologic abnormality)|
• 128804002 |Primary cutaneous CD30 antigen positive T-cell lymphoproliferative disorder (morphologic abnormality)|
• 397353001 |Lymphomatoid papulosis (morphologic abnormality)|
• 878856000 |Malignant lymphomatoid granulomatosis (morphologic abnormality)|
• 878865007 |Rhabdomyomatous mesenchymal hamartoma (morphologic abnormality)|
• 878881002 |Trichoblastoma (morphologic abnormality)|

Note - The published maps to ICD-O-3.1 are being updated only for maintenance purposes for the January 2021 release. The maps to ICD-O-3.2 are out of scope for the January 2021 release, and are planned for a future release after the publication of the ICD-O-3.2 classification.

Event

New concepts added: 29

Qualifier Value

New concepts added: 41

Social context

New concepts added: 6

Inactivation of subtypes of 372148003|Ethnic group (ethnic group)| - concepts which include "other" or relate to UK census have been inactivated from the International release and moved back to the UK extension.

Situation with explicit context 

New concepts added: 109

Content that included the word 'unilateral' in the FSN has been reviewed and inactivated with a status of ambiguous where appropriate. Replacement left and right concepts have been created in the clinical finding or procedure hierarchy where required.

Physical object

New concepts added: 47

Concepts inactivated: 10

• Approximately 420 "Has compositional material" attribute and value relationships were added to concepts in the physical object hierarchy, e.g., 415529004 |Silicone punctal plug (physical object)| was given a relationship of "Has compositional material (attribute)" with value of 13652007 |Silicone (substance)|.
• Approximately 100 attribute-value relationships were added to the physical object hierarchy for device characteristic of being coated or uncoated.
• Approximately 35 attribute-value relationships were added to the physical object hierarchy for device intended sites including head of femur and acetabulum.
• Approximately 50 gastrointestinal implant device concepts in the physical object hierarchy were modeled with the new device attributes. Some of these concepts had FSN and description changes as well.

Specimen

New concepts added: 16

Special concept

362955004 |Inactive concept (inactive concept)| and its seven descendants have been inactivated. When the first release format (RF1) was used, inactivated content was moved into this hierarchy. However, this approach is no longer used in the current release format (RF2).

Observable Entity 

Added 180 new concepts, mainly in the area of nutritional intake such as Measured quantity of fat and oil intake in 24 hours (observable entity).

• Inactivated ~30 dietary concepts including "Dietary X intake (observable entity)" e.g., 162513004 |Dietary fat intake (observable entity)| and Prescribed dietary intake (regime/therapy)
• Removed the Scale type attribute and value relationship from ~200 nutritional intake observable entity concepts to align with current editorial policy.
• Updated the Property attribute value and FSN for ~100 nutritional intake observable entity concepts

Organism

New organism concepts added: 164

Organism name changes: 101

Pharmaceutical/Biological Product

Active immunity stimulant therapeutic role

318331000221102 |Active immunity stimulant therapeutic role (role)| updated based on feedback received and with agreement from Drugs WG:

New FSN = Active immunity stimulant role (role)

New PT = Active immunity stimulant role

Stated parent changed from 766941000 |Therapeutic role (role)| to 766940004 |Role (role)|

Biological agent (product)

High-level grouper 69509008 |Biological agent (product)| was inactivated based on agreement from Drugs Working Group; the concept did not have any stated or inferred descendants.

Vaccine product "containing" groupers

Vaccine product "containing" groupers that are modeled with more than one active ingredient or with an active ingredient that is a substance modification have been inactivated as out of scope per the editorial guidelines.

Blood derivative product (product)

High-level grouper 346348003 |Blood derivative product (product)| was inactivated based on agreement from Drugs Working Group; the descendants were reviewed and remodeled using the existing medicinal product concept model.

Has ingredient characteristic and Has product characteristic attribute

Based on feedback provided by the Editorial Advisory Group, the Has ingredient characteristic and Has product characteristic attributes will be refined to more specific attributes in a future release.

Medical gases

349362006 |Medical gases (product)| was inactivated as outdated; descendants were remodeled per existing Medicinal product editorial guidelines. Exceptions to allow 385217004 |Conventional release gas for inhalation (dose form)| as a manufactured dose form for Medicinal product form concepts and synonyms for percent and parts per million strengths for Clinical drug concepts added to editorial guidelines. Note that existing concepts such as 320917000 |Oxygen gas (product)| or 421396006 |Helium + oxygen gas (product)|were remodeled as MP-only concepts as per decision made earlier in Medicinal product project.

Roles

Modeling of roles for medicinal product concepts was initiated; a log of roles modeled is available at Drugs Project in anticipation of removing product role groupers from the Substance hierarchy and using Medicinal product concepts as attribute values in the International Release for modeling concepts in other SNOMED CT hierarchies.

TallMan lettering

The Drugs Working Group agreed TallMan Lettering should be addressed in a National Extension, not the International Release.

Veterinary Extension

2 concepts were moved to the Veterinary Extension.

Metadata concept

New concepts added: 37

New metadata concepts have been added to support postcoordinated expressions.

• Reference set concepts:
  1119417006 |Postcoordinated expression type reference set (foundation metadata concept)|
  1119435002 |Canonical close to user form expression reference set (foundation metadata concept)|
  1119468009 |Classifiable form expression reference set (foundation metadata concept)|

• Reference set attribute concepts:
  Subtypes of 706999006 |Expression (foundation metadata concept)|:
  1119454002 |Compositional grammar expression (foundation metadata concept)|
  1119455001 |Close to user form expression (foundation metadata concept)|
  1119436001 |Canonical close to user form expression (foundation metadata concept)|

• Subtypes of 900000000000457003 |Reference set attribute (foundation metadata concept)|:
  1119456000 |Substrate (foundation metadata concept)|
  733616009 | Authoring substrate (foundation metadata concept) |
  1119457009 |Classification substrate (foundation metadata concept)|

• Attribute type concepts:
  Subtypes of 707000009 |SNOMED CT parsable string (foundation metadata concept)|:
  1119437005 |SNOMED CT compositional grammar (foundation metadata concept)|
  1119458004 |SNOMED CT expression constraint language (foundation metadata concept)|
  1119459007 |SNOMED CT expression template language (foundation metadata concept)|

• Subtype of 900000000000460005 |Component type (foundation metadata concept)|:
  1119460002 |Postcoordinated expression type component (foundation metadata concept)|

• Subtype of 900000000000460005 |String (foundation metadata concept)|:
  1119461003 |Uniform resource identifier (foundation metadata concept)|
  900000000000469006 | Uniform resource locator (foundation metadata concept)|

Substance

New concepts added: 103

New disposition and Disposition grouper concepts added: 6

As part of the Substance hierarchy maintenance, 81118006 |Gonadal hormone (substance)| was inactivated and replaced with 312263009 |Sex hormone (substance)|. The concepts previously subsumed by Gonadal hormone were remodeled where applicable.

Internal Quality Improvement

Replacement of the Stated Relationship files with the new OWL Axiom refset files

A set of documentation has been developed to support the Logic Profile Enhancements. 

• • SNOMED DL Profile Enhancements
  • SNOMED CT Logic Profile Specification
  • SNOMED CT OWL Guide (OWL Refsets specification)
  • Snomed OWL Toolkit - https://github.com/IHTSDO/snomed-owl-toolkit
  • Classifying SNOMED CT using the Snomed OWL Toolkit - https://youtu.be/-91egY9mJqA
  • Creating an OWL file containing SNOMED CT - https://youtu.be/sfFbMMioA_4

For any questions, please contact SNOMED International at support@snomed.org with “OWL Axiom refset files implementation question” in the subject line.

Machine Readable Concept Model (MRCM) Changes

Changes to the MRCM for the January 2021 release include:

• MRCM for new attribute |Unit of presentation size quantity|
• MRCM for new attribute |Unit of presentation size unit|
• MRCM: Expand the range of 370133003 |Specimen substance (attribute)| to include << 373873005 |Pharmaceutical / biologic product (product)| and << 260787004 |Physical object (physical object)|
• MRCM: Expand the range of 246501002 |Technique (attribute)| to include <<254291000 |Staging and scales (staging scale)

Further detail can be found at MRCM changes in the January 2021 release (Please note, you may have to register for Confluence user account in order to access this project and the relevant links above).

Concrete Domains and Numeric Representation

Please see here (and the various sub-pages) for details of the current proposed technical changes:  https://confluence.ihtsdotools.org/mag/concrete-domains-community-of-practice-consultation. (Please note, you may have to register for Confluence user account in order to access this link).

In this child page in particular there is guidance on the impact for both maintainers of SNOMED CT plus for implementers and vendors of software that utilises the terminology:  https://confluence.ihtsdotools.org/mag/concrete-domains-community-of-practice-consultation/snomed-international-proposal-for-representing-concrete-domains-in-rf2

Please, however, be aware that the technical proposal is still in the consultation stage, and therefore changes to the proposal may still be made before the final solution is implemented.

The transition has been discussed and agreed with numerous stakeholders from the community, and as such is targeted to be implemented over the course of the next two International Release cycles, as follows:

Q1 2021:

• A technical preview will be published in line with the January 2021 International Edition, with drug concept strengths and counts expressed as concrete values in the new Relationships file.
• This is currently planned to be a full RF2 International Edition package (as opposed to a standalone Delta file containing Concrete Domains), containing all International content in addition to the new Concrete Domains Relationship file
• (ie) it will comprise the January 2021 International Edition release as if we had already transitioned to Concrete Domains, as a preview of what the final Release package will look like when the transition is complete.

Q3 2021:

• The current target is for the July 2021 International Edition to be the first release after the transition to Concrete Domains.  This means that the RF2 package would be impacted as follows:
  • existing drug concept strength and count relationships inactivated +
  • existing strength and count attribute types will be inactivated, replaced with new ones using the same FSNs.
• Inferred Relationship file changes:
• Stated OWL Axiom file changes:
• existing drug concept axioms will be updated to use concrete values +
• existing strength and count attribute types will be inactivated, replaced with new ones using the same FSNs.
• Additional Features in International Release
• new separate concrete value relationship file will express these same attributes using numeric values
• new attributes will be used, although they will have the same FSNs as the current attributes
• MRCM will include new rows to indicate that the new attribute types are expected to take a concrete domain - specifically numbers - as target values.

If you can foresee any critical issues with the transition plans, or have any questions regarding any of these upcoming changes, please contact SNOMED International immediately at support@snomed.org with “Concrete Domains transition question” in the subject line.   

SNOMED CT derived products

ICD-10 map

The SNOMED CT to the International Statistical Classification of Diseases and Related Health Problems, Tenth Revision (© World Health Organization 1994) 2016 Version map (SNOMED CT to ICD-10 Map) is included in the SNOMED CT International release as a Baseline. The SNOMED CT to ICD-10 Map was created to support the epidemiological, statistical and administrative reporting needs of SNOMED International member countries and WHO Collaborating Centers.

The SNOMED CT to ICD-10 Map is released in Release Format 2 (RF2) only. It is located in the file der2_iisssccRefset_ExtendedMapFull_INT_20200731.txt, which is in the Map folder under Refset, in each of the three RF2 Release Type folders. 

The SNOMED CT to ICD-10 Map is released as Refset 447562003 |ICD-10 complex map reference set (foundation metadata concept)|.

Content development activity summary

The map is a directed set of relationships from SNOMED CT source concepts to ICD-10 target classification codes.  The SNOMED CT source domains for the MAP are limited to subtypes of 404684003 |clinical finding|, 272379006 |event| and 243796009 |situation with explicit context|.  The target classification codes are ICD-10 2016 release. 

 Mapped content for January 2021

The map provided for the January 2021  release has been updated, and now represents a complete map from SNOMED CT International release to ICD-10 2016 version.

• 1873 newly authored concepts have been added and mapped
• 3 new codes for special purposes  have been added to the terminology browser in accordance with WHO guidelines:

· U08 Personal history of COVID-19

· U09 Post COVID-19 condition

· U10 Multisystem inflammatory syndrome associated with COVID-19

We would welcome feedback on any issues that users of the map may detect when using the map. Issues should be submitted via mapping@snomed.org

Technical Guide Exemplars

The Technical Guide Exemplars document has now been moved from the International Edition release package to a Confluence page.  This page can be found as part of the ICD-10 Mapping Technical Guide (see Appendix B), which is hosted here:  http://snomed.org/icd10map

SNOMED CT to OWL conversion and classification

The repository containing the toolkit enabling simple SNOMED CT to OWL conversion and classification can be found here, including documentation on its use: https://github.com/IHTSDO/snomed-owl-toolkit

Please contact SNOMED International at support@snomed.org if you would like to provide any feedback on ways to extend and improve the new toolkit.

Technical notes

Known Issues

Known Issues are content or technical issues where the root cause is understood, and the resolution has been discussed and agreed but has yet to be implemented.  This can be due to a number of reasons, from lack of capacity within the current editing cycle, to the risk of impact to the stability of SNOMED CT if the fix were to be deployed at that stage in the Product lifecycle.  

For the current SNOMED CT International edition, the following Known Issues were identified, and agreed to be resolved in future editing cycles:

Resolved Issues

Resolved issues are Known Issues which were not fixed as part of the previous release lifecycle, but which have now been resolved in the latest release.  They can also be issues found during the Alpha and Beta testing of the current release, which were resolved before the final deployment of the associated Member release.  Finally they can be issues which were reported or found during the testing phase, but which have been closed without any action taken.  

The Resolved Issues for the current Snomed CT International edition can be found here:

Technical updates

RF2 package format

For future reference, the RF2 package convention dictates that it contains all relevant files, regardless of whether or not there is content to be included in each particular release.  Therefore, the package contains a mixture of files which contain both header rows and content data, and also files that are intentionally left blank (including only a header record).  The reason that these files are not removed from the package is to draw a clear distinction between files that:

• have been deprecated (and therefore removed from the package completely), due to the content no longer being relevant to RF2 in this or future releases, and 
• happen to contain no data in this particular release (and are therefore included in the package but left blank, with only a header record), but are still relevant to RF2, and could therefore potentially contain data in future releases.

This allows users to easily distinguish between files that have purposefully been removed or not, as otherwise if files in option 2 above were left out of the package it could be interpreted as an error, rather than an intentional lack of content in that release.

Configuration file in the RF2 package, containing Release Metadata 

A new file has been included since the July 2020 International Edition, containing metadata about the Release package itself.  This has been created in conjunction with feedback from the community, and as such initially contains the following fields:

• effectiveTime
  
• deltaFromDate
  
• deltaToDate
  
• languageRefset(s)
  
• humanReadableLanguageRefset(s)
  
• licenceStatement
  

The file is in .JSON format, to ensure that it is both machine-readable and human-readable, and is named "release_package_information.json".

The metadata will be extended and refined going forward, in order to ensure that it contains the most useful information possible. If you have any ideas about any other useful information to include, please send them to info@snomed.org, along with a business case explaining how the information would benefit stakeholders.  Please be aware that this use case will then be assessed by SNOMED International, and the new metadata will only be included in the configuration file if the business case is strong enough.  

New Refset Descriptor records

A reference set type has been created to give postcoordination implementations the option of storing expressions in RF2 format. A reference set of this type has been created for the "Canonical close to user form" and for the "Classifiable form" of expressions. Guidance on using these expressions will be provided during 2021.

Nine new records have therefore been added to the refsetDescriptor file for these new expression refsets.  These do not correspond to actual refsets in the International Edition release package, they are being introduced in order to support the implementation of a postcoordinated expression repository:

• (UUID) 20210131 1 900000000000012004 900000000000456007 1119417006 449608002 1119460002 0
• (UUID) 20210131 1 900000000000012004 900000000000456007 1119468009 449608002 1119460002 0
• (UUID) 20210131 1 900000000000012004 900000000000456007 1119468009 1119454002 1119437005 1
• (UUID) 20210131 1 900000000000012004 900000000000456007 1119435002 1119436001 1119437005 1
• (UUID) 20210131 1 900000000000012004 900000000000456007 1119417006 1119456000 1119461003 2
• (UUID) 20210131 1 900000000000012004 900000000000456007 1119435002 733616009 1119461003 2
• (UUID) 20210131 1 900000000000012004 900000000000456007 1119468009 1119457009 1119461003 2
• (UUID) 20210131 1 900000000000012004 900000000000456007 1119417006 1119454002 1119437005 1
• (UUID) 20210131 1 900000000000012004 900000000000456007 1119435002 449608002 1119460002 0

Members Release now Obsolete

The December 31st Member Release has been changed in time for the final Production Release on 31st January 2021.  The Member Release should therefore be considered obsolete and should not be used for anything but test purposes.  As always then, the final Production Release should be used in all systems.

The reason for the changes was as communicated, in order to include important COVID-19 Vaccines content in the January 2021 International Edition, that wasn't available until January itself.  Please see section 2.2 of these Release notes for full details of these changes.

In addition, four concepts were submitted via the CRS for inclusion into the January 2021 release accompanied with the incorrect concept ID.  During testing it was identified the following new concepts had concept ID that did not match the descriptions in the National extension from which they originated.  Please see section 2.1 of these Release notes for full details of these changes.

Concrete Domains Technical Preview

A technical preview of the impending Concrete Domains changes (currently planned for the July 2021 International Edition) will be published in February 2021, but in line with the January 2021 International Edition.  It will contain drug concept strengths and counts expressed as concrete values in a new Relationships file.  This is currently planned to be a full RF2 International Edition package (as opposed to a standalone Delta file containing Concrete Domains), containing all International content in addition to the new Concrete Domains Relationship file (ie) it will comprise the January 2021 International Edition release as if we had already transitioned to Concrete Domains, as a preview of what the final Release package will look like when the transition is complete.

International edition

Please see the following page for details of all upcoming changes planned for July 2021 January 2022 and beyond: https://confluence.ihtsdotools.org/display/RMT/July+2021+Early+Visibility+Release+Notice+-+Planned+changes+to+upcoming+SNOMED+International+Release+January 2022 Early Visibility Release Notice - Planned changes to upcoming SNOMED International Release packages

Document links

All links provide information that is correct and current at the time of this Release.  Updated versions may be available at a later date, but if so these will need to be requested from the relevant SNOMED International teams.