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Date of

Preliminary Handover meeting: Date of

Initial Handover meeting:  

 

Attendees

  • Andrew Atkinson (AAT)
  • Maria Braithwaite (MBR)
  • Donna Morgan (DMO)
  • Kai Kewley (KKE)
  • Peter Williams (PWI)
  • Rory Davidson (RDA)
  • Monica Harry (MHA)
  • Yongsheng Gao (YGA)

Date of Final Handover meeting: 

Nov 2019

 

Attendees

  • Andrew Atkinson (AAT)
  • Maria Braithwaite (MBR)
  • Donna Morgan (DMO)
  • Kai Kewley (KKE)
  • Peter Williams (PWI)
  • Rory Davidson (RDA)
  • Monica Harry (MHA)
  • Yongsheng Gao (YGA)

Apologies


Page properties


Handover Status

FINAL Handover - PASSED



Agenda

 

Items to be discussed

Actions

1

Prerelease Content Management Activities:

  1. Verify that all namespace concepts (in the namespace registry) have been added
  2. Inactivate the root concept synonym referencing previous release, and add synonym to reference current release.
  3. Update copyright date on synonym (January releases only; N/A to July 2014)
  4. Send updated laterality indicator spreadsheet to technical team to support qualifier generation.
  5. Get Content Team to deliver SE and SP refset files from Yongto Release Manager

  6. Content Team to deliver 4x MRCM refset files to Release Manager (just needs to confirm they're completed, downloaded + tested, AAT will then pull them out of the termServer during release builds via the termServer Export)

 

  1. MBR - confirmed with Yohani on 5 Nov 2019May 2020

  2. MBR - done please see

    Jira
    serverIHTSDO JIRA
    serverIdb202d822-d767-33be-b234-fec5accd5d8c
    keyINFRA-
    3968
    4591

  3. MBR - update root concept and synonym please see INFRA-3968- July release not needed.

  4. ACTION: Yongsheng Gao to deliver laterality indicatorlateralizable refset, as this now comes from the Refset tool ... AAT to receive from Yong  Yong on leave today, email sent to prepare files for 13 Nov 2019on 14th May 2020 - ****** NOT YET RECEIVED - HAD TO MOVE IT ALL TO WIP PROJECT IN ORDER TO GIVE YONG VISIBILITY OF THE NEW JULY 2020 CONTENT TO MIGRATE TO - YONG TO COMPLETE AND HAND OVER.....

  5. ACTION: Yongsheng Gao to deliver SE and SP files, AAT to receive from Yong  Yong on leave today, email sent to prepare files for 13 Nov 2019on 14th May 2020 - RECEIVED ON 14/05/2020

  6. ACTION:Yongsheng Gao ALREADY DONE!! Yong has confirmed MRCM files are complete and can be used in latest Alpha release builds ****** STILL REPAIRING AND RE-TESTING - LOOKS GOOD, SO AS LONG AS REGRESSION ALL GOOD WILL SEND BACK TO ED FOR RE-TEST....

    ACTION: Linda Bird to deliver final MRCM spreadsheet for cross checking (July 2020 ONLY), AAT to receive from Linda on 7th May 

2

Discussion of existing Known Issues from the previous Release

 

  1. ISRS-366 - Long term case significance fixes work has commenced for this, it will be ongoing over subsequent releases. STILL THE CASE?? MBR -Yes nothing new to report for July 2020
  2. ISRS-409- Specific case significance issue - I have asked JCA for an update, no immediate action, requires wider consultation.  LOOKS LIKE IT's RESOLVED NOW - MBR - yes this is resolved 07/05/2020.
  3. ISRS-575 - no action, being resolved over time with template based editing as part of QI project. STILL THE CASE?? Close this ticket as QI now a permanent feature? MBR - yes please close the ticket, it is a legacy issue that will be resolved over time with the QI project.
  4. ISRS-582 - checked no author changes required. RESOLVED - AAT + Maria to regression test in Alpha/Beta/Production to confirm still resolved..
  5. ISRS-562 - Finding with explicit context| concepts using |Associated Procedure| attribute - editing issue resolved. STILL THE CASE?? MBR yes this can be closed the changes went out in the Jan 2020 release.
  6. ISRS-563 - 8 concepts using |Surgical approach| that are not subtypes of |surgical procedure| - editing issue resolved. STILL THE CASE?? - MBR yes changes went out in the Jan 2020 release.
  7. ISRS-672 - Resolved - AAT + Maria to regression test in Alpha/Beta/Production to confirm still resolved...
  8. ISRS-673 - Resolved - AAT + Maria to regression test in Alpha/Beta/Production to confirm still resolved...
  9. ISRS-668 - Resolved - AAT + Maria to regression test in Alpha/Beta/Production to confirm still resolved...
  10. ISRS-739 - Resolved - AAT + Maria to regression test in Alpha/Beta/Production to confirm still resolved...
  11. ISRS-741 - Resolved - AAT + Maria to regression test in Alpha/Beta/Production to confirm still resolved...
  12. ISRS-720 - Resolved - AAT + Maria to regression test in Alpha/Beta/Production to confirm still resolved...
  13. ISRS-739 - Resolved - AAT + Maria to regression test in Alpha/Beta/Production to confirm still resolved...
  14. ISRS-700 - Yong and Linda confirmed that they were happy with the testing so far, and would complete testing by end of play today.
  15. We will then export the MRCM refsets tomorrow and re-build the early alpha release to confirm all working as expected.

    AAT to then send final MRCM refset to Linda + Yong for final confirmation...

    AAT to then send the confirmed MRCM refsets to Ed Cheetham for external confirmation....

3

Content Validation Activities in the Current Release cycle

2

Content Validation Activities:

  1. Concepts that have changed its high level hierarchy ancestor since last release
  2. Concepts with FSNs with changed semantic tags
  3. Active concepts with changed FSNs (check for shifts in meaning)
  4. Concepts *in*-activated since the last release
  5. Concepts *re*-activated since the last release
  6. Concepts that changed from fully defined to primitive
  7. Concepts that changed from primitive to fully defined
  8. New FSNs: Check for adherence to naming conventions, no acronyms, etc.
  9. Spell checking for new descriptions and/or manual inspection
  10. Review all new and changed text definitions
  11. Additions/removals of members of VMP refset (Inactive concepts still in the VMP refsets are removed during release extraction)
  12. Additions/removals of members of VTM refset (Inactive concepts still in the VTM refsets are removed during release extraction)
  13. Verify that there have been no changes to the Non-human refset in the Workbench.
  14. Additions/removals of members of ICD-O simple map refset (Inactive concept still in the ICDO map are removed during release extraction)
  15. Active concepts having active historical associations and reasons for inactivation

MBR has been analysing the Daily Build RVF results for the past few weeks, and working with Peter to clear down the failures. Early Alpha run by AAT 1st Nov 2019:

assertionText" : "All language refset members inactivated in current snapshot must have been active in the previous release." - https://jira.ihtsdotools.org/browse/INFRA-4306 FIXED

assertionText" : "Preferred Term exists exactly once in each language refset for each concept." - https://jira.ihtsdotools.org/browse/INFRA-4313 FIXED

assertionText" : "Concept should not have any duplicated historical association indicators." - https://jira.ihtsdotools.org/browse/INFRA-4312 FIXED

assertionText" : "All OWL Expression inactivated in current release must have been active in the previous release." - 

30th April 2020:

  1. ISRS-770 - False positives - whitelisted
  2. ISRS-771 - False positives - whitelisted
  3. ISRS-772 - False positives - whitelisted
  4. ISRS-773 - Whitelisted after investigation
  5. ISRS-774 - False positives - whitelisted
  6. ISRS-775 - MRCM Refsets need to be delivered for July 2020 and included in package before re-running validation. DONE - latest build is clean of this issues, so AAT + Maria to regression test in Alpha/Beta/Production to confirm still resolved...
  7. ISRS-776 - Requires a backend fix and a ticket is logged 
    Jira
    showSummaryfalse
    serverIHTSDO JIRA
    serverIdb202d822-d767-33be-b234-fec5accd5d8c
    keyINFRA-4998
    - STATUS FROM DEV? MBR- this is resolved - AAT + Maria to regression test in Alpha/Beta/Production to confirm still resolved...
  8. ISRS-777 - Resolved - AAT + Maria to regression test in Alpha/Beta/Production to confirm still resolved...
  9. ISRS-778 - Requires back end fix and ticket is already logged for this 
    Jira
    serverIHTSDO JIRA
    serverIdb202d822-d767-33be-b234-fec5accd5d8c
    keyINFRA-5001
    - Latest pre-Alpha build shows still 9 outstanding failures, a ticket is logged for these https://jira.ihtsdotools.org/browse/INFRA-
4308 FIXED

assertionText" : "There is a 1:1 relationship between the id and the key values in the ASSOCIATION REFSET snapshot file." - https://jira.ihtsdotools.org/browse/INFRA-4317 FIXED

assertionText" : "There is only one member id per description per dialect in the language refset snapshot file." - https://jira.ihtsdotools.org/browse/INFRA-4318 FIXED

assertionText" : "Relationship groups contain at least 2 relationships." - 
  1. 5068 and Peter G. Williams has the ticket in progress. MBR - this is resolved 07/05/2020. AAT + Maria to regression test in Alpha/Beta/Production to confirm still resolved...
  2. ISRS-779 - Requires back end fix and ticket is already logged for this 
    Jira
    serverIHTSDO JIRA
    serverIdb202d822-d767-33be-b234-fec5accd5d8c
    keyINFRA-5002
    - Latest pre-Alpha build shows still 2 outstanding failures, a ticket is logged for these
  1. https://jira.ihtsdotools.org/browse/INFRA-
4197 NOT AN ERROR NEEDS CHANGE TO RVF
  1. 5068 and Peter G. Williams has the ticket in progress. MBR - this is resolved 07/05/2020. AAT + Maria to regression test in Alpha/Beta/Production to confirm still resolved...
  2. ISRS-780 - Whitelisted after investigation
  3. ISRS-781 - requires back end fix, ticket already logged for this 
    Jira
    serverIHTSDO JIRA
    serverIdb202d822-d767-33be-b234-fec5accd5d8c
    keyINFRA-5030
    -  resolved but not yet promoted to MAIN so still appearing in RVF at this point....RESOLVED - can close ISRS-781? 5/5/2020 - Maria promoted new task to fix everything related to this concept, she will confirm once re-tested... MBR - this is resolved 07/05/2020. AAT + Maria to regression test in Alpha/Beta/Production to confirm still resolved...
  4. ISRS-782 - Resolved - AAT + Maria to regression test in Alpha/Beta/Production to confirm still resolved..

assertionText" : "Active concepts must have at least one IS A relationship." – 138875005 ROOT CONCEPT NO CHANGES NEEDED https://jira.ihtsdotools.org/browse/INFRA-4197

assertionText" : "An FSN containing the word \"pre-filled\" must be changed to prefilled." – AWAITING CHANGE TO RVF REPORT TO REMOVE ASSERTION https://jira.ihtsdotools.org/browse/ISRS-574

assertionText" : "It is not allowed to add a subtype as a parent." – CHECKED WITH TMO, JCA, YGA NO CHANGES NEEDED.

Warnings relating to language ref set inconsistencies, special characters in FSN, case significance, capitalisation etc –a large number of issues  addressed during this release cycle, there should be a reduction in the overall number of issues relating to the language ref set since the July release through efforts to ‘fix’ content where needed and also changes to the language ref sets in the author platform. 

Ticket logged for changes to the RVF report to allow us to identify active versus inactive concepts to help us to prioritise areas of content that need review going forwards https://jira.ihtsdotools.org/browse/INFRA-4052

Ticket is logged to align case sensitivity rules in the RVF with the editorial guidance which should also see a reduction in warnings relating to case sensitivity - https://jira.ihtsdotools.org/browse/INFRA-4301

Will log a new ticket to ask for ability to whitelist in RVF report for correct content that is currently showing upfor various reasons.

Maria confirms:

https://jira.ihtsdotools.org/browse/RP-127 - all issues resolved for Jan 2020 release, new report in RP confirms no new issues.
https://jira.ihtsdotools.org/browse/RP-165 - all issues resolved for Jan 2020 release, no new issues in RP report
  1. .

MBR will share content report with team when it is ready. 

34

Content Team Support availability - Confirm which members of the content team will remain on stand-by until clean database milestone is achieved after release build file QA and post-release assertions are validated.

Maria + Yong + Donna will all be around to support wherever needed Donna and Yong on leave at present (8 Nov 2019)

 

45

Early visibility of Release Notes

 

Discussion of existing Known Issues from the previous Release

 

Andrew Atkinson has created the template to update on Confluence: SNOMED CT July 2020 International Edition - SNOMED International Release notes - content team to update with relevant figures for January July 2020 content.....

ACTION: Maria Braithwaite and Donna Morgan will kindly aim to get them to Andrew Atkinson by 15 November 201915th May 2020

Maria and Monica updated - Is Donna also happy?

ACTION: Monica Harry and Paul Amos to review and approve once complete

 

5

  • ISRS-366 - Long term case significance fixes work has commenced for this, it will be ongoing over subsequent releases.
  • ISRS-409- Specific case significance issue - I have asked JCA for an update, no immediate action, requires wider consultation.

     

  • ISRS-575 - no action, being resolved over time with template based editing as part of QI project.
  • ISRS-574 - requires change to RVF report to remove this assertion altogether.

  • ISRS-582checked no author changes required.
  • INFRA-4197 - 147,000+ issues, needs change to assertion to allow self grouping, no editing changes needed.
  • ISRS-562 - Finding with explicit context| concepts using |Associated Procedure| attribute - editing issue resolved.
  • ISRS-563 - 8 concepts using |Surgical approach| that are not subtypes of |surgical procedure| - editing issue resolved.
  • 6Brief run through of the known issues already identified by the content team during the QA batch process, to ensure that technical team are aware of them, and can either resolve them in time for the release, or confirm as known issues.

    Mapping: 8 Nov 2019 Donna is on leave today she sends this update:

    Couple of outstanding tickets for mapping - Donna will let us know as soon as complete - might be done early so WCI can get a head start, she will confirm early next week..Technical QA has started. SNOMED has been reloaded and 1 concept has been identified as needing a map in the ICD-10 project - Drip feed must not have picked it up. The concept  32941000119104 Ingestion of toxic substance (disorder) has been mapped and WCI can re commence the release work. GMDN and ICD-O have been completed and WCI notified. Both projects will need to pass technical QA but nothing to report so far.

    7Versioning and Change Freeze

    This process is being fully documented for the first time in this cycle, and we will test and refine the process as we go forward:

    Technical Team Release tasks - July 2020KAI has run some manual checks for missing descriptions - no issues found.

    8Stats Report

    MBR has been using the Daily Build QA report for stats and has the information needed for release notes, also given access to https://docs.google.com/spreadsheets/d/1hgDBPG5TjarvGpRJD6LBUN1sHLizhWWchzWDXXjpPRk/edit#gid=3 by Peter for further information that will be useful for release notes.

    9Risks
    1. Kai - After versioning need to take care when rebasing some projects that still have content on them as never done before on this terminology server and may find strange behaviour - mitigation: Kai will do the rebasing after we have versioned. This will be done before editing reopens- Any SnowStorm risks for this release? Anything to consider from the new Technical Team Release tasks?
      1. YES - Kai and Michael still need to refine the process for Branching in the new SnowStorm world, so they will work on that on Monday 11th May Went well, new process confirmed...
    2. ANOTHER RISK IS THE NEW SITUATION WITH BEING DEPENDENT ON THE MARCH 2020 Release instead of Jan 2020
      1. This is being mitigated by publishing the formal July 2020 International Edition as if the March 2020 Interim release is an official release, with a Delta relative to March 2020, containing all of the new Corona content with an effectiveTime of 20200309. 
      2. In addition, we will publish a new Rollup Delta package alongside the July 2020 Release:
        1. This July 2020 Rollup Delta package will be a separate resource with clear documentation.  It will include all changes since January 2020, with the actual, official effectiveTime. Therefore all of the new Corona content would have an effectiveTime of 20200309. The rest of the content will have an effectiveTime 20200731.

        2. This rollup package should include instructions on how to cope with multiple effectiveTimes.

      3. We will also use this Rollup package as an opportunity to trial our new proposal for a .json config file in the Release Package, detailing metadata such as DeltaFrom and DeltaTo Dates, which will help avoid confusion in this situation.
    3. FINALLY the COVID-19 work needs to be properly documented in the Release Notes, in order to ensure that anyone who has been using the interim Web Page (with pre-emptive ID's etc) knows exactly how that all relates to the July 2020 Release content (whether ID's are all propagated or changed, etc), and that everyone understands what has/hasn't been included in the July 2020 release.
      1. Maria Braithwaite will test the July 2020 Release package to ensure that all COVID-19 content from the interim page is in fact included as expected in the July release content, and that all ID's are unchanged. Maria will then include detailed documentation in the Release Notes to ensure that all users understand what's been done and why.
    10