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Resource
https://www.hl7.org/fhir/specimen.html
Profile examples
https://simplifier.net/search?text=specimen&category=Profile&fhirVersion=STU3
Resource – concept model mapping
| Resource element (CodeableConcept) | ValueSet | SNOMED CT attribute | Comments |
|---|---|---|---|
| Specimen.type | << 123038009 | Specimen (specimen) | | ||
| Specimen.collection.method | << 17636008 | Specimen collection (procedure) | | 118171006 | Specimen procedure (attribute) | | |
| Specimen.collection.bodySite | << 442083009 | Anatomical or acquired body structure | | 118169006 | Specimen source topography (attribute) | | |
| Specimen.processing.procedure | << 108252007 | Laboratory procedure (procedure) | | 118171006 | Specimen procedure (attribute) | | ValueSet is too wide |
| Specimen.processing.additive | << 105590001 | Substance (substance) | | primitive | |
| Specimen.container.type | ?? << 434711009 | Specimen container (physical object) | ?? | - | ValueSet not adequate, e.g. 337386000 | Test tube (physical object) | no included. Generally, little content in SNOMED CT. Terminology requirements?? |
| Specimen.container.additiveCodeableConcept | << 105590001 | Substance (substance) | | primitive | |
| Specimen.subject ?? | << 125676002 | Person | OR << 35359004 | Family | OR << 133928008 | Community | OR << 49062001 | Device | OR << 276339004 | Environment | | 118170007 | Specimen source identity (attribute) | | |
| Specimen.type ?? | << 49755003 | Morphologically abnormal structure | | 118168003 | Specimen source morphology (attribute) | | SNOMED CT distinguishes site, abnormal morphology, and substance when specifying the material contents of the specimen, while FHIR only has type and collection.bodySite |
| Specimen.type ?? | << 105590001 | Substance (substance) | | 370133003 | Specimen substance (attribute) | |
| Attachments |
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