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Time:

0100 - 0430 PST

0900-1230 UTC


Zoom Meeting Details

Hi there, 

Jim Case is inviting you to a scheduled SNOMED International Zoom meeting. 

Topic: SNOMED Editorial Advisory Group Conference Call
Time: May 22, 2023 09:00 Pacific Time (US and Canada)

Join from PC, Mac, Linux, iOS or Android: 
https://snomed.zoom.us/j/83714568251?pwd=cEtNSFhNL0UwWWdmc0ovTG5hYStjQT09
    Password: 983972

    Meeting ID: 837 1456 8251

    Password: 983972
    International numbers available: https://snomed.zoom.us/u/kfbamO8U3

Or Skype for Business (Lync):
    https://snomed.zoom.us/skype/83714568251


Meeting Files:



Meeting minutes:

The call recording is located here.


Objectives

  • Obtain consensus on agenda items

Discussion items

Based on input from Monique van Berkum (document attached to agenda above) and the Gravity project, 13 "at risk" concepts submitted by the Gravity project were inactivated.  Additionally, a recommendation to create the necessary pre-coordinated concepts for use in the HAS REALIZATION relationship for the At risk model has mitigated the current need to extend the range of HAS INTERPRETATION, for the purposes of modeling risk findings as well as eliminated the need for a DUE TO relationship that resulted in inconsistent modeling patterns.

This remodeling has been performed and should be available in the May 2023 release.

The full model currently being used for "At risk" concepts is defined in the template located at: At [qualifier] risk of [finding/event] (finding) - Ready for review

High vs. increased and Low vs. decreased

Based on the discussion at previous conference call, 1144845004 |Risk of suicide decreased (finding)| has been inactivated and replaced by 394687007 |At low risk for suicide (finding)|.  A new concept grouper 1279548003 |Finding of low risk level (finding)| has been created to aggregate low risk concepts.  Decreased risk concepts are no longer accepted due to ambiguity as to relative decrease vs. below an established normal level.  

Many vague risk concepts have been inactivated and replaced with more explicit and specific concepts (e.g. 409046006 |Perinatal risk (finding)| replaced by 1269553009 |At increased risk for perinatal disorder (finding)|

Discussion:

Jim Case updated the group on the changes to "At risk" findings based on previous discussions with the EAG. 

Decision:

It was determined that for this use case, there is no need to consider changing the range of the HAS INTERPRETATION attribute to support Clinical findings or Procedures.

Review of Glossary definition for "Sufficiently defined concept".  See sufficiently defined concept

Additional information on Necessary and sufficient conditions: D.2 Necessary and Sufficient - Examples

Can a concept be sufficiently defined if part of the meaning of the FSN is captured only in the wording of a stated primitive parent, not in defining attribute-value relationships? For example: Joint laxity (finding) is primitive since it has no defining relationship(s) that capture the "laxity" aspect of the FSN meaning.  Many of its subtypes (e.g. Elbow joint laxity (finding), Hand joint laxity (finding) etc.) are modeled as sufficiently defined based on the stated parent Joint laxity plus the finding site relationship specifying the joint involved? 

Inconsistency between the Editorial Guide and the SNOMED Glossary:

Current Editorial guide states "A concept is sufficiently defined if its defining characteristics are adequate to define it relative to its immediate supertypes".  It is not clear whether "defining characteristics" here refers to defining attribute-value relationships specifically or to the logical definition as a whole.

  • Does "relative to its immediate supertypes" imply only the defining relationships and not information based on the FSN of the primitive parent? 
    • Would this mean then that all subtypes of an intermediate primitive concept must also remain primitive?
  • If information represented in the FSN of a stated primitive parent can be considered to fill a gap in meaning left by the defining attribute relationships, this policy should be clearly stated (and ideally illustrated with an example) in the editorial guide and under Intermediate Primitive Concept Modeling

The SNOMED Glossary states: ""A sufficiently defined concept has at least one sufficient definition that distinguishes it from any concepts or expressions that are neither equivalent to, nor subtypes of, the defined concept".

  • Is "definition status" of a concept part of the definition of a concept? Currently it acts in that way.  This occurs when two or more concepts have the same defining relationships, but only one is marked as sufficient defined.  Those that are not marked as sufficiently defined classify as subtypes.
    • In some cases the SNOMED concept model is inadequate to "fully" define the meaning of an FSN, yet can provide a sufficient definition to make it unique within the terminology.  In these cases the primitive subtypes with the same relationship have the necessary relationships, but not sufficient definitions.
The Glossary also states "Prior to July 2018, SNOMED CT could only support one sufficient definition for each concept could not represent the 8801005 | Secondary diabetes mellitus (disorder)| example above(Note: this example is no longer valid and needs updating in the glossary). A further limitation, that also prevented formal representation of that example was the stated relationship file was only able to represent necessary conditions.". 
  • Proposed clarification: "Prior to July 2018, SNOMED CT could only support one sufficient definition for each concept, and the stated relationships comprising that definition could represent only necessary conditions. A concept such as 417163006 |Traumatic or non-traumatic injury (disorder)| , which can be caused either by a traumatic event or by an intrinsic disorder (such as a tumor), could not be sufficiently defined within these constraints, since neither | Associated morphology| = | 37782003 |Damage (morphologic abnormality)| nor| Due to| = 773760007 |Traumatic event (event)| is necessarily true. Assigning the concept two sufficient definitions can, however, allow the full meaning of 417163006 |Traumatic or non-traumatic injury (disorder)|  to be formally represented. (See sufficient definition)."

Lastly, there is a statement: "Following these changes a concept will only be marked as sufficiently defined if it is sufficiently defined by relationships. However, the OWL axioms may provide a sufficient definition that cannot be fully represented as relationships."

  • This has come about with the ability to model concepts with multiple sufficient axioms using GCIs. Proposed clarification: "Following these changes a concept will only be given a definition status of Defined if it is sufficiently defined by the stated relationships in a single axiom. However, multiple OWL axioms may provide a sufficient definition representing different sufficient but not necessary relationships. These concepts will retain the default status Primitive but function as sufficiently defined concepts that will subsume subtypes."

Discussion:

Concepts with identical definitions aside from the Definition status may be classified as supertype/subtypes, due to the limitations of the concept model to allow for more robust definitions. This is being left with the EAG for additional comments to be reviewed at the April meeting. There is a question about whether the browser can be modified to show an icon that can identify a concept as having GCIs.  A question will be forwarded to the tech team.

Update 2023-03-26:  The current SNOMED Browser displays concepts with GCIs  in the stated diagram view; e.g.:

Image Removed

Discussion (2023-04-04):

The implied or explicit meaning of a primitive FSN can be used as part of the definition of a concept, regardless of whether it has defining relationships.  Similarly, the definition status is also part of the sufficient definition as it implies that the definitional relationships are enough to distinguish a concept from all other concepts in the terminology.  However, the current definitions do not take into account the move to axioms, i.e. a sufficiently defined concept would have an equivalence axiom.  The axioms (equivalence or subclass) determine whether a concept is sufficiently defined or primitive.  Concepts with GCIs usually represent sufficient definitions, but not necessary.  

Sufficiently defined concepts have at least two characteristics:

  • They can infer subclasses
  • They have one equivalent class axiom

Concepts with GCIs represent a partial definitions which may or may not cover all of the possible meanings of a concept, but these are not equivalent class axioms and all of the GCIs are not inherited by the subtypes. A straightforward definition may be a concept that is defined is sufficiently defined by necessary conditions. 'Primitive' concepts only have necessary conditions, specified by subclass axioms.

We still need better guidance on when to use GCIs and when to use additional axioms. 

ItemDescriptionOwnerNotesAction
1Call to order and role call

This meeting is being recorded to ensure that important discussion points are not missed in the minutes.  The recording will be available to the SNOMED International community.  Joining the meeting by accepting the Zoom prompt declares that you have no objection to your comments being recorded


  •  Recording of meeting approved by participants.
2

Conflicts of interest and agenda review



43

Inactivation of Navigational concept hierarchy

At the 2023-02-27 EAG conference call, the EAG approved the inactivation of the Navigational concept hierarchy. The EAG members requested a Briefing Note for the Community of Practice outlining the rationale and steps for inactivation.  The briefing note is attached for review.

Update 4/4/2023:

In discussions with the UK, it was discovered that the current use of Navigational concepts are the result of maps from Read version 2 to SNOMED provided to primary care vendors.  The erroneous nature of the maps may be a result of the movement of concepts from their original location in the taxonomy to the Navigational concept hierarchy at variable times in the past.  

The UK will provide SNOMED International with a list of mappings to navigational concepts and their current use cases.  SNOMED will provide replacement concepts for these prior to inactivation of the navigational concept.  Briefing note will be revised to reflect this new information.

Update 2023-05-08:

The following concepts have been identified as high usage concepts by the UK:

CONCEPTID    FSN
394617004    Result (navigational concept)
160237006    History/symptoms (navigational concept)
309157004    Normal laboratory finding (navigational concept)
267368005    Endocrine, nutritional, metabolic and immunity disorders (navigational concept)
243800003    Test categorized by action status (navigational concept)
250541005    Biochemical finding (navigational concept)
309230008    Borderline laboratory finding (navigational concept)
309158009    Laboratory finding abnormal (navigational concept)
118246004    Laboratory test finding (navigational concept)
282465005    Physiological functions and activities (navigational concept)
165347009    Laboratory test result borderline (navigational concept)
309159001    Normal hematology finding (navigational concept)
250207003    Hematology finding (navigational concept)
370121008    Disorder of blood / lymphatics / immune system (navigational concept)
309194008    Hematology finding abnormal (navigational concept)
276437003    Skin, hair and nail finding (navigational concept)
243798005    Procedure categorized by action status (navigational concept)

An updated Briefing note listing these concepts and the proposed replacements is attached to this agenda. This draft has been sent to the UK for their input as they are the member primarily affected by this change.

Discussion:

Decision:  

  •  Jim Case to update the BN and distribute to EAG, CMAG and Clinical Leads
5

At risk concept modeling

update

  •  Jim Case to continue modeling based on revised editorial guidance.
6Expansion of the range of HAS INTERPRETATIONJames R. Campbell 

Document by James R. Campbell  related to risk calculators is attached to the agenda.  

The primary premise is that the "proper use of HAS_INTERPRETATION when INTERPRETATION has value of an Observable entity is that the valueset must adhere rigorously to datatype restrictions specified by the SCALE_TYPE defining the Observable concept."   Additionally, the following extensions to the concept model are proposed:

1) Expand the valueset constraints for 719722006|Has realization (attribute)|

Note: Range for this attribute is currently << 272379006 |Event (event)| OR << 404684003 |Clinical finding (finding)| OR << 71388002 |Procedure (procedure)| OR << 719982003 |Process (qualifier value)|

2) Add a Risk property to <<118598001|Property (qualifier value)|
3) Create a role hierarchy for 363713009|Has interpretation (attribute)| to support additional attributes including concrete domains and ordered refsets that are needed
for Quantitative and Ordinal or quantitative Scale types
4) Aligning with the editorial principles of LOINC, a policy for employing refsets defining the valuesets for observable entity concepts with scale type of Nominal, Ordinal and
Ordinal or quantitative. These refsets would allow interpretation of evaluation findings and conceivably could by integrated into classification.

In reference to content development in the International release, the following must be considered:

  • On 2020-04-29 the EAG approved an editorial policy: When defining observable entities for the international release, the SCALE TYPE attribute will not be used. If extensions would like to add specific subtypes of observable entities that include the SCALE TYPE, they are free to do so.
    When using observable entities to define clinical findings, international concepts that do not include a SCALE TYPE relationship would be used a values for the INTERPRETS relationship. The exception to this guidance are existing "vital sign" observable entities that have been defined with the SCALE TYPE of "Quantitative".
  • The majority of Observable entities in the International release of SNOMED CT are not modeled, so Scale Type is not available.
  • There are currently no International concepts that require concrete values for HAS INTERPRETATION
  • It is not possible to support both concept based values and concrete values in the same range for a scale type such as "Quantitative or Ordinal"

Discussion:

James R. Campbell described the use of risk calculators at UNMC.  One question that had arisen was the editorial decision to not include a value for the SCALE attribute to Observable entities in the international release.  This was due to the fact that the "expected" scale was adequately described by the PROPERTY attribute value, and the TECHNIQUE attribute value as well as the observation that many of these risk calculators allowed for either a Ordinal or quantitative value.

However, the Regenstrief/SNOMED agreement obviates much of this as the LOINC extension will necessarily contain SCALE TYPE as that is a required LOINC part in the definition of a LOINC term. 

A discussion ensued on the need to create clinical findings that represented the combined observable-value that is represented by the INTERPRETS/HAS INTERPRETATION relationship group.  This did not seem to be the way that the data are collected in the EHR.  However, it was recognized that there is a need for clinical findings to be used as members of a value set bound to an observable to support assessments. 

Decision:

The discussion ended with consensus that there is no compelling use case at this time to expand the range of HAS INTERPRETATION at this time. The need to revise the editorial policy related to the inclusion of SCALE TYPE in modeling observable entities in the International release will be re-evaluated by the SNOMED content team.

7Mechanical Complication of deviceJim Case 

Should "Mechanical complication of device" be a disorder or a finding?

Current situation:

111746009 |Mechanical complication of device (disorder)| has 215 subtypes, all of which refer to a failure of a device without specifying a deleterious effect on the patient. 

       e.g. 285961000119107 |Mechanical breakdown of prosthetic heart valve (disorder)|

We also have disorder concepts that refer to a patient condition due to mechanical failure of a device 

       e.g. 5053004 |Cardiac insufficiency due to prosthesis (disorder)|

Without specifying the resultant condition associated with device mechanical issues, is it appropriate that these are represented as patient disorders, or should they be findings that may be related to disorders in the patient?

A briefing note using "Leakage of device as an example is located here.

Discussion:

Without an associated condition in the patient it is unclear whether there is an adverse impact on the patient.  In general, if the device is implanted, it can be assumed that there is a negative impact. These should be retained as disorders.  Each of the subtypes would need to be evaluated as to the potential impact on the patient.

2023-04-04

Additional issues and questions:

  1. If we agree that implantable device malfunctions result in an adverse condition in the patient, should the FSN reflect that, e.g. "Disorder due to mechanical breakdown of prosthetic heart valve"? Consensus - no...
  2. SNOMED CT does not have a general classification of implantable devices.  Is the following definition suitable to provide editorial guidance? FDA - "Medical implants are devices or tissues that are placed inside or on the surface of the body." Consensus - no

Definition provided by John Snyder - "Medically implanted devices refer to any manufactured device, prosthesis, or biological construct that is surgically implanted into or physically attached to the body to aid in the diagnosis, treatment, or monitoring of a medical condition".

Discussion:

Implantable devices might be considered as a type of body part, thus a disorder of the device would of necessity cause a problem in the patient and should be a disorder. While there may not be a morphological abnormality, there is an abnormality of the device. Is a new attribute needed to represent device abnormality?  This discussion is restricted to medical devices and not transplanted tissues and organs.

Some implantable devices are not prostheses.

With reference to a proposed definition, what does physically attached mean?  Look at how FHIR has addressed this.  Should imply some introduction method, rather than just an attachment to the body.

The top level concept could be moved to clinical findings.  There is an issue with the term "complication".  Subtypes would be individually reassessed.  Propose that the disorder boundary start with mechanical complication of implanted device.

Kin Wah will provide documents related to a discussion on implantable devices.

Update 2023-04-10:

Upon investigation, as expected, these concepts (i.e. Mechanical complication) are classification derived (ICD-9, ICD-10, and ICD-11) and refer to injury or harm to a patient caused by a failure, breakdown, or malfunction of a device.  Coding guidance indicated that (for ICD-11) the disorder caused by the mechanical complication should be coded first and then associated with the device. Thus, the intended meaning of these concepts imply a disorder in the patient due to some issue with the device. The actual terms are index terms in the ICD.  Example:

PK91.22 Cardiovascular devices associated with injury or harm, mechanical or bioprosthetic valves (ICD-11)

    Index term: Mechanical complication of heart valve prosthesis

This would suggest that these concepts are correctly placed in the taxonomy, and they are currently mapped to ICD disorders (i.e. injury or harm to patient) but are possibly not modeled sufficiently to express the implied meaning.  A new approach to modeling these concepts will be undertaken to clean up this sub-hierarchy.

Definition of device malfunction from the US Code of Federal Regulations TITLE 21--FOOD AND DRUGS, CHAPTER I--FOOD AND DRUG ADMINISTRATION, SUBCHAPTER H - MEDICAL DEVICES
PART 803 -- MEDICAL DEVICE REPORTING: "Malfunction means the failure of a device to meet its performance specifications or otherwise perform as intended. Performance specifications include all claims made in the labeling for the device. The intended performance of a device refers to the intended use for which the device is labeled or marketed..."

8Intermediate primitive parent and definition status of subtype
  •  Jim Case to send a note to the MAG inquiring about the value of a new definition status that identifies a concept with GCIs
9Inspection vs. exploration actionsJim Case 

A query was posed as to the difference between 129433002 |Inspection - action (qualifier value)| and 281615006 |Exploration - action (qualifier value)|, both subtypes of 302199004 |Examination - action (qualifier value)|. The internal consensus was that these are clinically different with the former limited to visual evaluation and the latter implying an active examination.  Various medical dictionary definitions concur with this view:

e.g. Exploration - "An active examination, usually involving endoscopy or a surgical procedure, to ascertain conditions present as an aid in diagnosis. - 
Medical Dictionary for the Health Professions and Nursing © Farlex 2012"

Inspection - "The visual examination of the body using the eyes and a lighted instrument if needed. The sense of smell may also be used. - Gale Encyclopedia of Medicine. Copyright 2008 The Gale Group, Inc. All rights reserved."

This would imply that surgical procedures would more frequently use exploration as the METHOD than inspection; however, this does not appear to be the case

<<387713003 |Surgical procedure|:260686004 |Method| = 129433002 |Inspection - action| = 306

<<387713003 |Surgical procedure|:260686004 |Method| = 281615006 |Exploration - action| = 150

For non-surgical procedures the difference is more extreme

(<<71388002 |Procedure| MINUS <<387713003 |Surgical procedure|):260686004 |Method| = 129433002 |Inspection - action| = 710

(<<71388002 |Procedure| MINUS <<387713003 |Surgical procedure|):260686004 |Method| = 281615006 |Exploration - action| = 220

Many of the non-surgical procedures modeled using inspection are some form of endoscopy.  Given the definitions above and the consensus of the internal content development team, should SI undertake a project replacing Inspection with Exploration for surgical and endoscopic procedures?  It is anticipated that much of this can be done automatically.

Discussion:

Need to review the definition associated with Inspection procedure and Exploration procedure. General consensus is that we do not change the modeling unless there is a clear distinction that can be applied other than what is expressed in the FSN. 

Explorations can be performed without visualization, but Inspections do require visualization.  The current definitions on both need clarification as they imply a supertype/subtype relationship:

122458006 |Exploration procedure (procedure)| -  An observation of the body or a body part done by inspection and/or palpation.

32750006 |Inspection (procedure)| - An exploration using the sense of sight, done with the eyes.

Endoscopy/laparoscopy etc. all use a scope of some sort to visualize the body structures, so should use Inspection as the action. Almost all concepts that use Exploration - action have the word Exploration in the FSN. 

An associated question, based on the current definition in SNOMED of Exploratory procedure, should Palpation -action be a subtype of Exploration - action?  


4Severity as a defining attributeJim Case 

The attribute 246112005 |Severity (attribute)| is an approved defining attribute for Clinical findings in the MRCM; however editorial guidance has been rather ill-defined in relation to the use of this attribute due to the subjectivity of assigning a severity to a clinical finding (i.e. "Severity is defined relative to the expected degree of intensity or hazard of the Clinical finding that is being qualified."

The use of the SEVERITY attribute is complicated by the lack of knowledge about the ordinal scale from which the selected severity originated.  For example, the source severity value set may have different sets of values such as: 

• mild / moderate / severe
• minimal / mild / moderate / severe / very severe
• mild / mild to moderate / moderate / moderate to severe / severe / life threatening / fatal

The current editorial guidance for the use of the SEVERITY attribute has a modeling note attached:

Modeling

Generally, 246112005 |Severity (attribute)| is not used to model concepts precoordinated in the International Release, but there are some exceptions. 

A valid exception requires an internationally accepted definition that can be consistently applied and used reliably for international comparison.  Even though a reference may be internationally sourced, its use may not always be uniformly applied by multiple countries. Classifications of severity that represent variation in clinical presentations and enact limitations with age ranges, sex, or pregnancy status, do not apply universally to all patients of all ages, prove problematic, and may not be generally useful. 

The requestor is responsible for obtaining permission for use in SNOMED CT if required by the international body.  

Issue

The issue to be discussed originated at the April 2023 business meeting where it was noticed that some diseases (e.g. Severe asthma) were primitive concepts and thus it is not possible to identify the duplications and subsumptions in postcoordinated expressions that use the severity attribute. 

As an alternative to precoordination in the international release, this attribute can be used as a qualifier in postcoordination.  However, beware that postcoordination of severity results in the same irreproducibility issues as pre-coordination. 

The question is whether the restrictions on the use of SEVERITY in the International release be relaxed, allowing for any concept that explicitly states severity in the FSN have a severity relationship assigned?  

Discussion:


Decision:


5Surgical action

In January, the EAG discussed the definition of "Surgical procedure" and revision of the current MRCM attribute was discussed (2023-01-23 SNOMED Editorial Advisory Group Conference Call).  In light of the fact that we are not able to come up with a standard definition for surgical procedure, we should eliminate the specific action methods under 129284003 |Surgical action (qualifier value)| to the more general 129264002 |Action (qualifier value)| concepts.  As we review the current 129264002 |Action (qualifier value)| hierarchy, we are finding that there are a number of actions that can be applied to either a surgical or non-surgical procedure.  

What we have found is that the definition of a surgical procedure depends primarily on who performs the procedure.  This is problematic as the same procedure may be performed by multiple categories of healthcare professionals. The current definition was broadened from the initial definition in 2021 and now represents an overarching meaning that overlaps with many types of procedures that would not normally be considered surgical (e.g. freezing of warts, reduction of nursemaid elbow). 

Retaining this distinction of surgical and non-surgical procedure will result in the need to create a number of specific surgical actions with unknown benefit in the classification of procedure concepts.  Elimination of the need to specify Surgical procedure as a specific subtype of procedure would obviate the need for the creation of these specific "surgical" actions. 


610AOBEAG



11Next meetingEAG

Next meeting April 4. SNOMED business meetingTBD based on holiday schedules